Job Description P22256 Confidence 99.84% Date Thu Jan 5 11:38:48 GMT 2012 Rank 202 Aligned Residues 310 % Identity 13% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G
Query Conservation
Alig confidence																																												.	.	.																						.	.
Template Conservation																																												.	.	.																						.	.
Template Sequence		F	C	F	D	S	T	Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	.	.	.	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	.	.	L	Q	K	G	D	H	L	I	A	G	D	T
Template Known Secondary structure					S	S									T	T		S	S			S	B	T	T	T																	T	.	.	.		S						S	S										T	T	T	.	.			T	T							S	S
Template Predicted Secondary structure																																												.	.	.																						.	.
Template SS confidence
		1532	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.				.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.			.	.	.	.	.	1600	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Sequence		L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	V	E	K	V	K	A	A	W	K	.	.	.	.	.	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S
Template Known Secondary structure																	T	T								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S										.	.	.	.	.	T	T								S	S		T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		1607	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.																					.	.	.	.	.	.	.	.	1640	.	.						.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																													.	.								.
Query SS confidence																																																													.	.								.
Query Sequence		S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G	G	F	P	.	.	L	A	G	V	T	G	R	.	A	E	V	M	D	A	V	A	P	G	G
Query Conservation																																																													.	.								.
Alig confidence			.	.	.	.																							.	.	.	.																													.	.								.
Template Conservation			.	.	.	.																							.	.	.	.
Template Sequence		D	.	.	.	.	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	.	.	.	.	S	P	C	F	L	K	P	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R
Template Known Secondary structure			.	.	.	.												T								T	T	T	.	.	.	.		T	T	T			G	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S
Template Predicted Secondary structure			.	.	.	.																							.	.	.	.
Template SS confidence
		1662					.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.					.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																			.	350	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	L	G	A	M	I
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		K	D	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	.	.	.	.	.	.	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F
Template Known Secondary structure																					T	.	.	.	.	.	.	T																					T		T	T							T	T	S	T	T	S	T	T									S	S			S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		1734	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.							.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.																										.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	V	L	R	I	L	V	P	L	T	I	E	D	A	Q	I
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.
Template Sequence		L	F	E	M	.	.	.	.	.	.	.	.	K	S	F	E	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	E	N	V	D	D	I	I
Template Known Secondary structure						.	.	.	.	.	.	.	.	S	S									T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T								S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.
Template SS confidence
		1808	.	1810	.									.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	G	L	E	I	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	L	K	Q	A	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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