Job Description P22256 Confidence 99.87% Date Thu Jan 5 11:38:48 GMT 2012 Rank 187 Aligned Residues 331 % Identity 10% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		62	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure													.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	A	A	V	E	A	Q	L	K	K	.	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E	N	A	V	K	I	A	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	E	A	X	I	A	A	L	N	Q	S	X	D	S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L
Template Known Secondary structure														T	T		G	G	G																			T	T			T	T							S	S																														S
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
			125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A	P	E	D	I	A	A	I
Query Conservation		.
Alig confidence		.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A
Template Known Secondary structure			T	T	G	G	G							T	T	S		T									T	T	S		G	G	G						B		T	T	S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.																.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
		204	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure											.																																							.	.
Query SS confidence											.																																							.	.
Query Sequence		V	I	E	P	V	Q	G	E	G	.	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	.	.	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G	G	F	P	L	A	G	V	T
Query Conservation											.																																							.	.
Alig confidence											.						.	.	.	.																														.	.
Template Conservation																	.	.	.	.
Template Sequence		I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	.	.	.	.	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L
Template Known Secondary structure						B	S		T	T	T			B			.	.	.	.												T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S	S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.					.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		G	R	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D	V	R	G	L	G	A	.	M	I	A	I	E	L
Query Conservation																																																																											.
Alig confidence				.	.	.	.	.	.	.	.	.																																								.																							.
Template Conservation				.	.	.	.	.	.	.	.	.																																								.
Template Sequence		V	N	.	.	.	.	.	.	.	.	.	D	K	S	N	F	K	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	.	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	S	L	S	T	V	L	F	R	A
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.		G	G	G	G	G	G	G					T											T																.										T		T	T					S			S	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																								.
Template SS confidence
		799	800										.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.		840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																											.	.																		.
Query SS confidence																											.	.																		.
Query Sequence		F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	.	.	L	I	L	L	S	C	G	P	Y	Y	N	V	L	R	I	L	V	.	P	L	T	I	E	D	A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A
Query Conservation																											.	.																		.
Alig confidence				.	.	.																					.	.																		.
Template Conservation				.	.	.
Template Sequence		T	H	.	.	.	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L	A	V	E	L
Template Known Secondary structure				.	.	.	S	S	S																	T	S		B							T	T											T	T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		893	.				.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions