Job Description P22256 Confidence 99.93% Date Thu Jan 5 11:38:48 GMT 2012 Rank 112 Aligned Residues 329 % Identity 15% Template c2ogeC_ PDB info PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form Resolution 2.05 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	K	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S	E	A	V	E	N	A	V	K	I	A
Query Conservation
Alig confidence													.	.	.	.	.																					.	.	.	.	.																.	.	.
Template Conservation													.	.	.	.	.																					.	.	.	.	.																.	.	.
Template Sequence		F	L	D	L	K	A	A	Y	E	E	L	.	.	.	.	.	R	A	E	T	D	A	A	I	A	R	V	L	D	S	G	R	Y	L	L	G	.	.	.	.	.	P	E	L	E	G	F	E	A	E	F	A	A	Y	C	E	.	.	.	T	D	H	A	V	G	V	N	S	G	M	D	A	L	Q	L	A	L	R	G	L
Template Known Secondary structure		S										T	.	.	.	.	.															T			S	S	S	.	.	.	.	.														T	T	.	.	.	S	S						S													T
Template Predicted Secondary structure													.	.	.	.	.																					.	.	.	.	.																.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K	N	D	A	A	P	E	D	I	A	A
Query Conservation
Alig confidence		.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation		.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template Sequence		.	.	G	I	G	P	G	D	E	V	I	V	P	S	H	T	Y	I	A	S	W	L	A	V	S	A	T	G	A	T	P	V	P	V	E	P	H	E	D	H	P	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	L	L	V	E	K	A	I	T	P	R	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	T			T	T							S	S	S										T	T	T								B		S	S	S	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G			S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
				79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																		120	.	.	.	.	.	.	.	.	.	130	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G	G	F	P	L	A	G	V	T	G	R
Query Conservation
Alig confidence																	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		T	R	A	L	L	P	V	H	L	Y	G	H	P	A	D	.	.	.	.	M	D	A	L	R	E	L	A	D	R	H	G	L	H	I	V	E	D	A	A	Q	A	H	G	A	R	Y	R	G	R	R	I	G	A	G	S	S	V	A	A	F	S	F	Y	P	G	N	L	G	C	F	G	D	G	G	A	V	V	T	G	D
Template Known Secondary structure								B		G	G	G					.	.	.	.											T	T								T	T		T	T				T	T			T	T		T	T															S	S								S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.											.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	V	M	D	A	V	A	P	G	G	L	G	G	.	.	.	.	.	.	.	.	.	.	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	I	G	D	V	R	G	L	G
Query Conservation																.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	L	A	E	R	L	R	M	L	R	N	Y	G	S	R	Q	K	Y	S	H	E	T	K	G	T	N	S	R	L	D	E	M	Q	A	A	V	L	R	I	R	L	A	H	L	D	S	W	N	G	R	R	S	A	L	A	A	E	Y	L	S	G	L	A	G	L	P	G	I	G	L	P	V	T	A	P	D	T	D	P
Template Known Secondary structure												T	B	T	T		S	B	T	T	B		S	S				B																	T																			T	T	T		T	T	S	B						T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.																										.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	R	I	L	V	P	L	T	I	E	D
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		V	W	H	L	F	T	V	R	T	E	R	R	.	.	.	.	.	.	.	.	.	D	E	L	R	S	H	L	D	A	R	G	I	D	T	L	T	H	Y	P	V	P	V	H	L	S	P	A	Y	A	G	E	A	P	P	E	G	S	L	P	R	A	E	S	F	A	R	Q	V	L	S	L	P	I	G	P	H	L	E	R
Template Known Secondary structure				S							T	T		.	.	.	.	.	.	.	.	.										T	T	B			B		S		S	S		G	G	G	S	G	G	G	T	T	T	S			T	T	S																	S	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300										.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	A	L	R	V	I	D	A	V	R	E	W	A	E	R	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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