Job Description P22256 Confidence 99.93% Date Thu Jan 5 11:38:48 GMT 2012 Rank 116 Aligned Residues 347 % Identity 15% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																	.													.	.	.	.	.	.	.
Query SS confidence																																	.													.	.	.	.	.	.	.
Query Sequence		R	E	Y	L	D	F	A	G	G	I	A	V	L	N	T	G	H	L	H	P	K	V	V	A	A	V	E	A	Q	L	K	.	K	L	S	H	T	C	F	Q	V	L	A	Y	.	.	.	.	.	.	.	E	P	Y	L	E	L	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	T	G	S
Query Conservation																																	.													.	.	.	.	.	.	.
Alig confidence											.	.					.	.	.														.													.	.	.	.	.	.	.																	.	.
Template Conservation											.	.					.	.	.																																																		.	.
Template Sequence		R	E	G	L	E	L	I	A	S	.	.	E	N	F	V	.	.	.	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	G	A	.	.	A	W	A	N	V	Q	P	H	S	G	S
Template Known Secondary structure				S					T	T	.	.					.	.	.									T	S	G	G	G	G							T	T			S	S	S																					T		.	.	S							S	S
Template Predicted Secondary structure											.	.					.	.	.																																																		.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.			.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	V	E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I	F	K
Query Conservation
Alig confidence												.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	N	M	A	V	Y	M	A	L	.	.	.	M	E	P	G	D	T	L	M	G	M	D	L	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	D	L	E	E	V	R	R	L	A	L
Template Known Secondary structure												.	.	.			T	T								G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T		T	T	S						S									T	T	T		S
Template Predicted Secondary structure												.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120													.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I	A	G
Query Conservation
Alig confidence						.	.	.	.	.	.																.	.	.	.
Template Conservation						.	.	.	.	.	.																.	.	.	.
Template Sequence		E	H	R	P	.	.	.	.	.	.	K	V	I	V	A	G	A	S	A	Y	P	R	F	W	D	.	.	.	.	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	P	Y	A	H	V	V	T	S	T	T	H	K	T	L	R	G
Template Known Secondary structure						.	.	.	.	.	.	S							S	S			S				.	.	.	.												T								T	T	T						T	T	S	S				T	T	T		S						S	S	G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.																.	.	.	.
Template SS confidence
		161	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		G	F	P	L	A	G	V	T	G	R	A	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G	L	L	A	I	A	E	K	H	P	E	.	I	G	D	V	R	G	L
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		P	R	G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	Y	R	I	V	T	G	G	T	D
Template Known Secondary structure			S							S													T	T	T	T		S	S																	T	S																							T	T	T				G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.									.	.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	C	G	P	Y	.	.	.	.	.	.	.	.	Y	N	V	L	R	I	L	V	P	.	.	.	.	L	T	I	E	D	A	Q	I	R	Q	G	L	E	I	I	S	Q
Query Conservation																																												.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence																.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation																.	.	.	.	.	.	.
Template Sequence		N	H	L	F	L	V	D	L	R	P	K	G	L	T	.	.	.	.	.	.	.	G	K	E	A	E	E	R	L	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R
Template Known Secondary structure		S	S							G	G	G	T			.	.	.	.	.	.	.										T	T	T									T	T			S		T	T	T		S												T	T			G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.								.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	F	D	E	A	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	L	E	G	P	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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