Job Description P22256 Confidence 99.64% Date Thu Jan 5 11:38:48 GMT 2012 Rank 229 Aligned Residues 307 % Identity 16% Template c2a7vA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2 Resolution 2.04 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.																					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110
Predicted Secondary structure																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		H	P	K	V	V	A	A	V	E	A	Q	L	K	K	.	.	.	.	L	S	H	T	C	F	Q	V	L	A	Y	E	P	Y	L	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E	I	M	N	Q	K	V	P	G	D	F	A	K	K	T	L	L	V	T	.	.	.	.	T
Query Conservation																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.								.	.	.	.
Template Conservation																																																																				.	.
Template Sequence		D	P	E	M	W	E	L	L	Q	R	E	K	D	R	Q	C	R	G	L	E	L	I	A	S	E	N	F	C	S	R	A	A	L	E	A	L	G	S	C	L	N	N	K	Y	S	E	G	V	D	E	I	E	L	L	C	Q	R	R	A	L	E	A	F	D	L	D	.	.	P	A	Q	W	G	V	N	V	Q	P	Y	S
Template Known Secondary structure																			S					T	T													T	S	G	G	G	T							T														T	T			.	.	T	T	T								S	S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	E	A	V	E	N	A	V	K	I	A	R	A	A	T	K	R	S	G	T	I	A	F	S	G	A	Y	H	G	R	T	H	Y	T	L	A	L	T	G	K	V	N	P	Y	S	A	G	M	G	L	M	P	G	H	V	Y	R	A	L	Y	P	C	P	L	H	G	I	S	E	D	D	A	I	A	S	I	H	R	I
Query Conservation
Alig confidence														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	P	A	N	L	A	V	Y	T	A	L	.	.	.	L	Q	P	H	D	R	I	M	G	Y	K	L	N	P	K	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	D	Y	N	Q	L	A	L	T
Template Known Secondary structure														.	.	.			S									B		T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B
Template Predicted Secondary structure														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																																							.	.	.	.	160	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	N	D	A	A	P	E	D	I	A	A	I	V	I	E	P	V	Q	G	E	G	G	F	Y	A	S	S	P	A	F	M	Q	R	L	R	A	L	C	D	E	H	G	I	M	L	I	A	D	E	V	Q	S	G	A	G	R	T	G	T	L	F	A	M	E	Q	M	G	V	A	P	D	L	T	T	F	A	K	S	I
Query Conservation
Alig confidence						.	.	.	.										.	.									.	.	.	.
Template Conservation						.	.	.	.										.	.									.	.	.	.
Template Sequence		A	R	L	F	.	.	.	.	R	P	R	L	I	I	A	G	T	.	.	S	A	Y	A	R	L	I	D	.	.	.	.	Y	A	R	M	R	E	V	C	D	E	V	K	A	H	L	L	A	D	M	A	H	I	S	G	L	V	A	A	K	V	I	P	S	P	F	K	H	A	D	I	V	T	T	T	T	H	K	T	L
Template Known Secondary structure						.	.	.	.			S							.	.	S	S			S				.	.	.	.											T	T								G	G	G						T	T	S	S			G	G	G	T		S						S	S	G	G	G
Template Predicted Secondary structure						.	.	.	.										.	.									.	.	.	.
Template SS confidence
		197	.	.	200					.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.																.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		A	G	G	F	P	L	A	G	V	T	G	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	M	D	A	V	A	P	G	G	L	G	G	T	Y	A	G	N	P	I	A	C	V	A	A	L	E	V	L	K	V	F	.	E	Q	E	N	L	L	Q	K	A	N	D	L	G	Q	K	L	K	D	G
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence							.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation							.
Template Sequence		R	G	A	R	S	.	G	L	I	F	Y	R	K	G	V	K	A	V	D	P	K	T	G	R	E	I	P	Y	T	F	E	D	R	I	N	F	A	V	F	P	S	L	Q	G	G	P	H	N	H	A	I	A	A	V	A	V	A	L	K	Q	A	C	T	P	M	F	R	E	Y	S	L	Q	V	L	K	N	A	R	A	M
Template Known Secondary structure			S		S		.								S						T	T	T																	T	T	T	T			S																		S
Template Predicted Secondary structure							.
Template SS confidence
		267	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.								390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.																	.	.
Query SS confidence																																																									.	.	.	.	.	.	.																	.	.
Query Sequence		L	L	A	I	A	E	K	H	P	E	I	G	D	V	R	G	L	G	A	M	I	A	I	E	L	F	E	D	G	D	H	N	K	P	D	A	K	L	T	A	E	I	V	A	R	A	R	D	K	G	L	I	L	L	S	.	.	.	.	.	.	.	C	G	P	Y	Y	N	V	L	R	I	L	V	P	L	T	I	.	.
Query Conservation																																																									.	.	.	.	.	.	.																	.	.
Alig confidence																																		.	.	.	.	.	.	.																	.	.	.	.	.	.	.																	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence		A	D	A	L	L	E	R	G	Y	S	L	V	S	G	G	T	D	N	H	L	V	L	V	D	L	R	P	K	G	L	D	G	.	.	.	.	.	.	.	A	R	A	E	R	V	L	E	L	V	S	I	T	A	N	K	N	T	C	P	G	D	R	S	A	I	T	P	G	G	L	R	L	G	A	P	A	L	T	S	R
Template Known Secondary structure								T	T				G	G	G	S		S	S	S							T	T	T	T				.	.	.	.	.	.	.										T	T									T	T				S	S	S		S						S						T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.								.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
				406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	D	A	Q	I	R	Q	G	L	E	I	I	S	Q	C	F	D	E	A	K	Q
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		Q	F	R	E	D	D	F	R	R	V	V	D	F	I	D	E	G	V	N	I	G	L	E
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions