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Job DescriptionP22256
Confidence99.69%DateThu Jan 5 11:38:48 GMT 2012
Rank227Aligned Residues324
% Identity14%Templatec1c4kA_
PDB info PDB header:lyaseChain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   83......90.........100.........110.........120.........130.........140.... .....150.........160.
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Query Sequence  YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHY. TLALTGKVNPYSAGMGL
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Template Sequence  HEGPAVAAEKHAARVYN. . ADKTYFVLGGSSNANNTVTSALVSNG. . DLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN
Template Known Secondary structure  TBTTT..
SSS

TT..
TT

TTTT



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   171........180....... ..190.........200.........210... ......220.........230.........240......
 
   162.......170.........180.........190... ......200.........210.........220.........230.....
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Query Sequence  MPGHVYRALYPCPLHGISEDDAIASIHRIFKN. . . . . . DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIM
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Template Sequence  PYGFIGGIYDSDF. . . . . . . . DEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYD. . GTIYN. . . . AHEVVKRIGHLCDY
Template Known Secondary structure  TT


GGGS........
TTTSST
S

BSSB
TT..S
....GGGBS
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   247..250......... 260.........270.........280.........290... ..... .300.........310..
 
   236...240........ .250.........260.. .. .....270.........280..... ....290......
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Query Sequence  LIADEVQSGAGRT. . . . GTLFAMEQMGVAPD. . . . LT. . TFAKSIAGGFPLAGVTGRAEV. . . . . . . . . MDAVAPGGLGG
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Template Sequence  IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLF
Template Known Secondary structure 
TT

GGGSSGGGGGG
TTS




TTS

SS

TT

GGGTTSTT


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   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   297..300.........310.........320.........330.........340.........350....
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Query Sequence  TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAM. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  MSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRF
Template Known Secondary structure  S
SS

STT
SSSS
STTGGGS
TT
GGGGB
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   393......400.........410.........420.........430.........440.........450.........460.........470..
 
   355....360...... ...370.........380.........390.........400........
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Query Sequence  . . . . . . . . . . . . . . . . IAIELFEDGDHN. . . . . . . . . . KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDA
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Template Sequence  EKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD. . LNSILFLMTPAETPA
Template Known Secondary structure 
TT
TTT

TT

TT

TT
SSTTTT
SS


TT


S
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TT

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   473......480.........490.........500.........510.........520.........530..... ....540.........550
 
   409410.........420......
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Query Sequence  QIRQGLEIISQCFDEAKQ
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Template Sequence  KMNNLITQLLQLQRLIEE
Template Known Secondary structure  T
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   551........560........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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