Job Description P08312 Confidence 98.96% Date Thu Jan 5 11:01:02 GMT 2012 Rank 50 Aligned Residues 297 % Identity 16% Template c3qo8A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of seryl-trna synthetase from candida albicans Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		H	L	A	E	L	V	A	S	A	K	A	A	I	S	Q	A	S	D	V	A	A	L	D	N	V	R	V	E	Y	L	G	K	K	G	H	L	T	L	Q	M	T	T	L	R	E	L	P	P	E	.	.	E	R	P	A	A	G	A	V	I	N	E	A	K	E	Q	V	Q	Q	A	L	N	A	R	K	A	E	L	E	S
Query Conservation																																																			.	.
Alig confidence																																																			.	.
Template Conservation
Template Sequence		D	P	E	I	I	K	A	S	Q	K	K	R	G	D	S	V	E	L	V	D	E	I	I	A	E	Y	K	E	W	V	K	L	R	F	D	L	D	E	H	N	K	K	L	N	S	V	Q	K	E	I	G	K	R	F	K	D	A	K	D	L	I	A	E	K	E	K	L	S	N	E	K	K	E	I	I	E	K	E	A	E
Template Known Secondary structure														T			S																																					S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.																																																															.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	L	N	A	R	L	A	A	E	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	S	L	P	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	K	N	L	R	S	K	I	N	Q	V	G	N	I	V	H	E	S	V	V	D	S	Q	D	E	E	N	N	E	L	V	R	T	W	T	P	E	N	Y	K	K	P	E	Q	I	A	A	A	T	G	A	P	A	K	L	S	H	H	E	V	L	L	R	L	D	G	Y	D	P	E	R	G	V	R	I	V	G	H	R
Template Known Secondary structure													S						T	T	S				S		G	G	G										T	T			S	S	S	S	B		T	T	T			B			S									T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure															.																																																					.	.	.
Query SS confidence															.																																																					.	.	.
Query Sequence		R	R	I	E	N	G	G	L	H	P	V	T	R	.	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	.	.	.	R	L	L	R	T	Q	T	S	G	V	Q
Query Conservation															.																																																					.	.	.
Alig confidence															.																										.	.	.	.	.																							.	.	.					.
Template Conservation																																									.	.	.	.	.																														.
Template Sequence		G	Y	F	L	R	N	Y	G	V	F	L	N	Q	A	L	I	N	Y	G	L	S	F	L	S	S	K	G	Y	V	P	L	Q	A	P	V	M	M	N	K	.	.	.	.	.	E	V	M	A	K	T	A	Q	L	S	Q	F	D	E	E	L	Y	K	V	I	D	G	E	D	E	K	Y	L	I	.	A	T	S	E	Q	P
Template Known Secondary structure							T																			T	T	T								S					.	.	.	.	.				T	T	T	S								T							T	T							.	S	S	T
Template Predicted Secondary structure																																									.	.	.	.	.																														.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250
		175	.	.	.	.	180	.	.									.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		I	R	T	M	K	A	Q	Q	.	.	.	.	.	.	.	.	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	.	.	.	.	.	.	.	.	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	.	.	.	.	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F
Query Conservation										.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		I	S	A	Y	H	A	G	E	W	F	E	S	P	A	E	Q	L	P	V	R	Y	A	G	Y	S	S	C	F	R	R	E	A	G	S	H	G	K	D	A	W	G	I	F	R	V	H	A	F	E	K	I	E	Q	F	V	L	T	E	P	E	K	S	W	E	E	F	D	R	M	I	G	C	S	E	E	F	Y	Q	S	L
Template Known Secondary structure				T	T	T	T	T				S	S																				T	T			S	T	T		S	S	S	S	S		S													G	G	G																			T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.														.	.	.										.
Query SS confidence																											.	.	.														.	.	.										.
Query Sequence		F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P	S	A	E	V	D	V	.	.	.	M	G	K	N	G	K	W	L	E	V	L	G	C	.	.	.	G	M	V	H	P	N	V	L	R	.	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R
Query Conservation																											.	.	.														.	.	.										.
Alig confidence					.																						.	.	.														.	.	.										.
Template Conservation					.
Template Sequence		G	L	P	.	Y	R	V	V	G	I	V	S	G	E	L	N	N	A	A	A	K	K	Y	D	L	E	A	W	F	P	F	Q	Q	E	Y	K	E	L	V	S	C	S	N	C	T	D	Y	Q	S	R	N	L	E	I	R	C	G	I	K	K	Y	V	H	C	L	N	S	T	L	S	A	T	E	R	T	I	C	C	I
Template Known Secondary structure		T			.								G	G	G			T	T		S										T	T	T	T												T	T							T								B
Template Predicted Secondary structure					.
Template SS confidence
		331	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions