Job Description P08312 Confidence 98.64% Date Thu Jan 5 11:01:02 GMT 2012 Rank 72 Aligned Residues 197 % Identity 11% Template c3mf2B_ PDB info PDB header:ligase Chain: B: PDB Molecule:bll0957 protein; PDBTitle: crystal structure of class ii aars homologue (bll0957) complexed with2 amp Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.									.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	T	R	T	I	D	R	I	E	S	F	F	G	E	L	.	.	.	G	F	T	V	A	T	G	P	E	I	E	D	D	.	.	.	.	.	.	.	.	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	E	S	I	V	E	R	L	A	A	L	I	T	S	H	R	E	A	G	T	E	A	L	R	F	P	P	V	M	S	R	A	Q	L	E	K	S	G	Y	L	K	S	F	P	N	L	L	G	C	V	C	G	L	H	G	T	E	R	E	I	N	A	A	V	S	R	F	D	A	G	G	D	W	T	T	S	L	S	P
Template Known Secondary structure																	T			T	T								S										T	T						T	T	T									S														T	T	S		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
			157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																										.		.																				.	.	.	.
Query SS confidence		.																																										.		.																				.	.	.	.
Query Sequence		.	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	.	Y	.	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	.	.	.	.	I	S	F	T	N	L	K	G	T	L	H	D
Query Conservation		.																																										.		.																				.	.	.	.
Alig confidence		.											.	.																														.		.																				.	.	.	.
Template Conservation													.	.
Template Sequence		A	D	L	V	L	S	P	A	A	C	Y	.	.	P	V	Y	P	I	A	A	S	R	G	P	L	P	K	G	G	L	R	F	D	V	A	A	D	C	F	R	R	E	P	S	K	H	L	D	R	L	Q	S	F	R	M	R	E	Y	V	C	I	G	T	P	D	D	V	S	D	F	R	E	R	W	M	V	R	A	Q	A
Template Known Secondary structure								S	S	S	S	T	.	.	T							T	T		S			T	T																	S	S	T	T	S		S
Template Predicted Secondary structure													.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.										.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.															.	.	.																								.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.															.	.	.																								.	.	.
Query Sequence		F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	.	.	.	.	.	.	.	.	.	P	F	T	E	P	S	A	E	V	D	V	M	G	K	.	.	.	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	.	.	.	D	P	E	V	Y	S	G	F	A
Query Conservation																					.	.	.	.	.	.	.	.	.															.	.	.																								.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.															.	.	.																								.	.	.
Template Conservation
Template Sequence		I	A	R	D	L	G	L	T	F	R	V	D	Y	A	S	D	P	F	F	G	R	V	G	Q	M	K	A	V	S	Q	K	Q	Q	Q	L	K	F	E	L	L	I	P	L	R	S	E	E	Q	P	T	A	C	M	S	F	N	Y	H	R	E	H	F	G	T	T	W	G	I	Q	D	A	N	G	E	P	A	H	T	G	C
Template Known Secondary structure						T	T																											T	T	S								S	S		S	S	S											T	T							T		B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	M	G	M	E	R	L	T	M	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	F	G	M	D	R	L	A	V	A	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions