Job Description P08312 Confidence 98.80% Date Thu Jan 5 11:01:02 GMT 2012 Rank 61 Aligned Residues 154 % Identity 14% Template c3lssA_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.
Predicted Secondary structure																																																			.	.	.																						.	.	.	.	.	.
Query SS confidence																																																			.	.	.																						.	.	.	.	.	.
Query Sequence		T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	.	.	.	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	.	.	.	.	.	.	Q
Query Conservation																																																			.	.	.																						.	.	.	.	.	.
Alig confidence																											.	.	.	.	.																				.	.	.									.													.	.	.	.	.	.
Template Conservation																											.	.	.	.	.																															.
Template Sequence		L	V	S	Y	S	L	D	F	L	V	K	R	G	Y	T	P	F	Y	P	P	F	F	L	N	R	.	.	.	.	.	D	V	M	G	E	V	A	Q	L	S	Q	F	D	E	E	L	Y	Q	V	S	G	D	G	D	K	K	Y	L	I	A	.	T	S	E	M	P	I	A	A	Y	H	R	G	R	W	F	T	E	L	K
Template Known Secondary structure												T	T	T								S					.	.	.	.	.							S								T						S	S	S	S						S	.	S	T								T	T	T				S			S
Template Predicted Secondary structure																											.	.	.	.	.																															.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.						.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.									.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence		P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	T	.	.	.	.	.	.	.	.	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	.	.	.	.	.	.	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F
Query Conservation																					.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.																	.	.	.	.	.	.																					.
Template Conservation																																																																							.
Template Sequence		E	P	L	K	Y	A	G	M	S	T	C	F	R	K	E	A	G	A	H	G	R	D	T	L	G	I	F	R	V	H	Q	F	D	K	I	E	Q	F	V	V	C	S	P	R	Q	E	E	S	W	R	H	L	E	D	M	I	T	T	S	E	E	F	N	K	S	L	G	L	P	.	Y	R	V	V	N	I	C	S	G	A
Template Known Secondary structure		S															T	T		S	S	S			S	T	T	S	S		S													S	S	T	T																					T			.								T	T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.
		249	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		P	F	T	E	P	S	A	E	V	D	V	.	.	.	M	G	K	N	G	K	W	L	E	V	L	G	C
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		L	N	N	A	A	A	K	K	Y	D	L	E	A	W	F	P	A	S	G	A	F	R	E	L	V	S	C
Template Known Secondary structure				S	S		S										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions