Job Description P08312 Confidence 100.00% Date Thu Jan 5 11:01:02 GMT 2012 Rank 2 Aligned Residues 253 % Identity 35% Template c3l4gI_ PDB info PDB header:ligase Chain: I: PDB Molecule:phenylalanyl-trna synthetase alpha chain; PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		N	A	R	K	A	E	L	E	S	A	A	L	N	A	R	L	A	A	E	T	I	D	V	S	L	P	G	R	R	I	E	N	G	G	L	H	P	V	T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	.	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		T	E	L	S	P	E	M	I	S	S	G	S	W	R	D	R	P	F	K	P	Y	N	F	L	A	H	G	V	L	P	D	S	G	H	L	H	P	L	L	K	V	R	S	Q	F	R	Q	I	F	L	E	M	G	F	T	E	M	P	T	D	N	F	I	E	S	S	F	W	N	F	D	A	L	F	Q	P	Q	Q	H	P
Template Known Secondary structure		S	S										T	T	T	T	S								S	S																											T	T									S								T	G	G	G	T			S	S		G
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.																																								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence		A	R	A	D	H	D	T	F	W	F	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	.	.	.	.	.	K	A	Q	Q	P	P	I	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		A	R	D	Q	H	D	T	F	F	L	R	D	P	A	E	A	L	Q	L	P	M	D	Y	V	Q	R	V	K	R	T	H	S	Q	G	G	Y	G	S	Q	G	Y	K	Y	N	W	K	L	D	E	A	R	K	N	L	L	R	T	H	T	T	S	A	S	A	R	A	L	Y	R	L	A	Q	K	K	P	F	T	P	V	K
Template Known Secondary structure		G	G	S	T	T	T	S		B		S	S	S		B		S																T		B	T	T	B					S								T	B							T													T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure													.																																																																				.
Query SS confidence													.																																																																				.
Query Sequence		I	I	A	P	G	R	V	Y	R	N	D	.	Y	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P	S	A	E	V	D	V	M	G	K	N	G	.
Query Conservation													.																																																																				.
Alig confidence													.																																									.	.																										.
Template Conservation																																																						.	.
Template Sequence		Y	F	S	I	D	R	V	F	R	N	E	T	L	D	A	T	H	L	A	E	F	H	Q	I	E	G	V	V	A	D	H	G	L	T	L	G	H	L	M	G	V	L	R	E	F	F	T	K	L	G	I	T	.	.	Q	L	R	F	K	P	A	Y	N	P	Y	T	E	P	S	M	E	V	F	S	Y	H	Q	G	L	K
Template Known Secondary structure														S	B	T	T	B		S													S																T	T	T			.	.										T	T		S	S								B	T	T	T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.			.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R	Y	G	V	T	D	L	R	S	F	F	E	N	.	.	D	L	R	F	L	K	Q	F	K
Query Conservation																																																								.	.
Alig confidence																								.																																.	.
Template Conservation																								.
Template Sequence		K	W	V	E	V	G	N	S	G	V	F	R	P	E	M	L	L	P	M	G	L	P	.	E	N	V	S	V	I	A	W	G	L	S	L	E	R	P	T	M	I	K	Y	G	I	N	N	I	R	E	L	V	G	H	K	V	N	L	Q	M	V	Y	D	S	P
Template Known Secondary structure		B																G	G	G	T			.	T	T										S					T	T	S	S			S						S	S	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions