Job Description P08312 Confidence 97.66% Date Thu Jan 5 11:01:02 GMT 2012 Rank 90 Aligned Residues 149 % Identity 8% Template c3ikmC_ PDB info PDB header:transferase Chain: C: PDB Molecule:dna polymerase subunit gamma-2; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme Resolution 3.24 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.
Query Sequence		V	T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	.	.	.	.	.	.	Q	Q
Query Conservation																																																																										.	.	.	.	.	.
Alig confidence																												.	.	.	.																.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																												.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	N	L	A	A	E	W	W	T	S	V	V	V	F	R	E	Q	V	F	P	V	D	A	L	H	.	.	.	.	H	K	P	G	P	L	L	P	G	D	S	A	F	R	S	.	.	.	.	.	.	.	.	.	.	G	K	L	R	E	N	L	L	H	G	A	L	E	H	Y	V	N	C	L	D	L	V	N	K	R
Template Known Secondary structure																S	S			B							S	.	.	.	.						S	S	S	S				S	S		.	.	.	.	.	.	.	.	.	.			S		S																G	G	G	S
Template Predicted Secondary structure																												.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.											.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																					.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	T	.	.	.	.	.	.	.	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	.	.	.	.	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T
Query Conservation																					.	.	.	.	.	.	.																		.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		L	P	Y	G	L	A	Q	I	G	V	C	F	H	P	V	F	D	T	K	Q	I	R	N	G	V	K	S	I	G	E	K	T	E	A	S	L	V	W	F	T	P	P	R	T	S	N	Q	W	L	D	F	W	L	R	H	R	L	Q	W	W	R	K	F	A	M	S	P	S	N	F	S	S	S	D	C	Q	D	E	E	G
Template Known Secondary structure						B																S	S	S		S																	T	T																						S	S	T	T	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	S	A	E	V	D	V	M	G	K	N	G	K	W	L	E	V	L	G	C
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		R	K	G	N	K	L	Y	Y	N	F	.	P	W	G	K	E	L	I	E	T	L
Template Known Secondary structure												.	T	T
Template Predicted Secondary structure												.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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