Job Description P08312 Confidence 99.76% Date Thu Jan 5 11:01:02 GMT 2012 Rank 21 Aligned Residues 178 % Identity 13% Template c3icaB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: the crystal structure of the beta subunit of a phenylalanyl-trna2 synthetase from porphyromonas gingivalis w83 Resolution 2.44 Å

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		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.
Predicted Secondary structure																																																								.	.	.	.	.															.	.	.	.
Query SS confidence																																																								.	.	.	.	.															.	.	.	.
Query Sequence		R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	.	.	.	.	.	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	.	.	.	.	K	A	Q
Query Conservation																																																								.	.	.	.	.															.	.	.	.
Alig confidence																						.	.	.	.																			.	.	.										.	.	.	.	.															.	.	.	.
Template Conservation																						.	.	.	.																			.	.	.
Template Sequence		K	W	Q	T	V	V	S	E	Q	L	V	G	A	G	F	N	E	I	L	N	.	.	.	.	N	S	L	T	A	G	S	Y	Y	E	G	L	K	S	H	P	R	E	.	.	.	X	A	V	E	L	X	N	P	L	S	Q	E	L	N	C	X	R	Q	T	L	L	F	G	G	L	E	T	L	S	H	N	L	R	R	K
Template Known Secondary structure														T	T							.	.	.	.		S				G	G	G	G	T	T		S	S	S		G	G	.	.	.	G			B		S	S		S		S	S	S					S		S														T	T
Template Predicted Secondary structure																						.	.	.	.																			.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.													.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	.	Y	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	.	.	.	.	.	.	.	.	.	.	.	.	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F
Query Conservation																		.																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																		.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																								.
Template Sequence		H	L	S	L	Y	L	F	E	W	G	K	C	Y	R	F	H	A	A	K	R	T	D	E	T	P	L	A	A	Y	A	E	D	D	R	L	G	I	W	I	C	G	Q	R	V	H	P	E	E	P	T	S	V	F	E	L	K	A	V	V	E	Q	V	L	C	R	V	G	I	E	T	.	G	A	Y	T	L	K	T	A	D
Template Known Secondary structure			S																	S	S	S	S	S		S																	B							B																	T	T			G	.	G	G
Template Predicted Secondary structure																																																																								.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	T	E	P	S	A	E	V	D	V	M	G	K	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L
Query Conservation
Alig confidence																		.	.	.																							.	.	.
Template Conservation																		.	.	.																							.	.	.
Template Sequence		N	D	L	Y	A	S	A	X	E	V	K	T	R	S	G	K	.	.	.	L	L	G	T	F	G	T	V	S	T	E	L	I	K	R	F	E	I	E	Q	P	V	.	.	.	Y	F	A	E	L	L	W	D	A	L
Template Known Secondary structure			T	T										T	T			.	.	.																T	T			S			.	.	.
Template Predicted Secondary structure																		.	.	.																							.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions