Job Description P08312 Confidence 96.74% Date Thu Jan 5 11:01:02 GMT 2012 Rank 92 Aligned Residues 181 % Identity 17% Template c3hxxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp Resolution 2.11 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	P	P	I	.	R	I	I
Query Conservation																																																																														.
Alig confidence																												.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																												.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	I	R	Q	A	F	L	D	F	F	H	S	K	G	H	Q	V	V	A	S	S	S	L	V	P	.	H	N	D	P	T	L	L	F	T	N	A	G	M	N	Q	F	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	L	G	L	D	K	R	N	Y	S	R	A	T
Template Known Secondary structure															T	T									S	S		.	T	T		S	S		S	S			S	T	T	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	S	S			S		S
Template Predicted Secondary structure																												.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																						.	50	.	.	.	.	.	.	.	.	.	60	.	.
		189	190	.	.	.	.	.						.	.		.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure									.	.	.	.	.			.		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.			.		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	G	R	V	Y	R	.	.	.	.	.	N	D	.	Y	.	.	.	.	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.			.		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.			.		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	Q	R	C	V	R	A	G	G	K	H	N	D	L	E	N	V	G	Y	T	A	R	H	H	T	F	F	E	M	L	G	N	F	S	F	G	D	Y	F	K	L	D	A	I	L	F	A	W	L	L	L	T	S	E	K	W	F	A	L	P	K	E	R	L	W	V	T	V	Y	E	S	D	D	E	A	Y	E	I	W
Template Known Secondary structure											T	T				T	T	T	T	T	T	S	S	S			S										S	S	S																	T	T	T	T				G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
			232	.	.	.	.	.	.	.	240	.	.	.											.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.															260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure		.													.	.	.	.	.	.	.	.	.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.													.	.	.	.	.	.	.	.	.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	N	F	F	E	E	D	L	Q	I	R	F	.	.	.	.	.	.	.	.	.	.	R	P	S	Y	F	P	F	T	.	.	.	.	.	E	P	S	A	E	V	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	K	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R
Query Conservation		.													.	.	.	.	.	.	.	.	.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.													.	.	.	.	.	.	.	.	.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	E	V	G	I	P	R	E	R	I	I	R	I	G	D	N	K	G	A	P	Y	A	S	D	N	F	W	Q	M	G	D	T	G	P	C	G	P	C	T	E	I	F	Y	D	H	G	D	H	I	W	G	G	P	P	G	S	P	E	E	D	G	D	R	Y	I	E	I	W	N	I	V	F	M	Q	F	N	R	Q	A
Template Known Secondary structure				T	T				G	G	G						S	T	T	S	S	T	T		B	T	T				S	S	S	S															T	T	S					T	T	S	T	T	T	T	S	S	S																T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R	Y	G	V	T	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	T	M	E	P	L	P	K	P	S	V	D	T	G	M	G	L	E	R	I	A	A	V	L	Q	H	V	N	S	N
Template Known Secondary structure		T	S																								T	T		S	S	G
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions