Job Description P08312 Confidence 99.66% Date Thu Jan 5 11:01:02 GMT 2012 Rank 29 Aligned Residues 193 % Identity 20% Template c3g1zB_ PDB info PDB header:ligase Chain: B: PDB Molecule:putative lysyl-trna synthetase; PDBTitle: structure of idp01693/yjea, a potential t-rna synthetase from2 salmonella typhimurium Resolution 1.95 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	.	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	P	P	I	R	I	I
Query Conservation																											.
Alig confidence																											.																.	.	.	.	.	.	.																												.	.
Template Conservation																																											.	.	.	.	.	.	.																												.	.
Template Sequence		A	A	I	M	A	E	I	R	R	F	F	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	T	D	I	H	L	F	P	F	E	T	R	F	.	.	.	.	.	.	.	V	G	P	Q	G	I	N	L	Y	L	M	T	S	P	E	Y	H	M	K	R	L	L	A	A	G	C	G	.	.	P	V	F
Template Known Secondary structure															T	T								S			S						T	T									.	.	.	.	.	.	.												S		S										T	T			.	.	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.																												.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90
		189	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure											.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	G	R	V	Y	R	N	D	.	Y	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																					.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.
Template Sequence		Q	L	C	R	S	F	R	N	E	E	M	G	R	H	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	.	.	M	Y	R	L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	Q	P	A	E	S	L	S	Y	Q	Q	A	F	Q	R	H	L	E	I	D	P	L	S	A	D	K	T	Q	L	R	E
Template Known Secondary structure													B	T	T	B		S											T			.	.																																			S			T	T	T
Template Predicted Secondary structure																																.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
																															235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.								.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P	S	A	E	.	.	.	.	.	.	.	V	D	V	M	G	K	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.						.
Template Conservation																																																																	.
Template Sequence		A	A	A	K	L	D	L	E	E	D	R	D	T	L	L	Q	L	L	F	T	M	G	V	E	P	H	I	G	K	E	K	P	T	F	I	Y	H	F	P	A	S	Q	A	S	L	A	Q	I	S	T	E	D	H	R	V	A	E	R	F	E	V	Y	Y	.	K	G	I	E	L	A	N	G	F	H	E	L	T	D	A	R
Template Known Secondary structure						T	T																	T	G	G	G	S	S	S	S	S								B	G	G	G		T	T	B		B		S	S		T	T	B	B	S							.	T	T									B
Template Predicted Secondary structure																																																																	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		279	280	.									.	.	.	.	.	.	.	.	290														.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	R	.	.	.	.	.	.	.	.	N	V	G	I	D	P	E	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R	Y	G	V	T	D	L	R	S
Query Conservation					.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	G	L	P	Q	Q	P	I	D	Q	N	L	L	D	A	L	A	A	G	L	P	D	C	S	G	V	A	L	G	V	D	R	L	V	M	L	A	L	G	A	E	S	L	A	D
Template Known Secondary structure																																			S																	T		S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions