Job Description P08312 Confidence 98.38% Date Thu Jan 5 11:01:02 GMT 2012 Rank 80 Aligned Residues 156 % Identity 16% Template c3errB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase Resolution 2.27 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.
Predicted Secondary structure																																																					.																				.	.	.	.	.
Query SS confidence																																																					.																				.	.	.	.	.
Query Sequence		T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	.	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	.	.	.	.	.	Q	P	P	I
Query Conservation																																																					.																				.	.	.	.	.
Alig confidence																										.	.	.	.	.																							.																				.	.	.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		L	L	R	F	A	M	D	F	M	A	R	R	G	F	L	P	M	T	L	P	S	Y	A	R	.	.	.	.	.	E	K	A	F	L	G	T	G	H	F	P	A	Y	R	D	Q	V	W	A	I	A	E	T	D	L	Y	L	T	G	T	A	E	V	V	L	N	A	L	H	S	G	E	I	L	P	Y	E	A	L	P	L
Template Known Secondary structure													T	T								S				.	.	.	.	.								T		T	T	T	T	G	G	G					T	T	S	S					S	S	T								T	T	T					G	G	G		S
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.					.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250
Predicted Secondary structure																	.	.	.	.		.	.	.	.														.	.	.						.	.	.																													.
Query SS confidence																	.	.	.	.		.	.	.	.														.	.	.						.	.	.																													.
Query Sequence		R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	.	.	.	.	T	.	.	.	.	H	T	P	M	F	H	Q	M	E	G	L	I	V	.	.	.	D	T	N	I	S	.	.	.	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	.	F	P	F
Query Conservation																	.	.	.	.		.	.	.	.														.	.	.						.	.	.																													.
Alig confidence																	.	.	.	.		.	.	.	.														.	.	.						.	.	.																													.
Template Conservation
Template Sequence		R	Y	A	G	Y	A	P	A	F	R	S	E	A	G	S	F	G	K	D	V	R	G	L	M	R	V	H	Q	F	H	K	V	E	Q	Y	V	L	T	E	A	S	L	E	A	S	D	R	A	F	Q	E	L	L	E	N	A	E	E	I	L	R	L	L	E	L	P	Y	R	L	V	E	V	A	T	G	D	M	G	P	G
Template Known Secondary structure															S			S	S	S		S	S	S	S	S		S													S																							T	T															S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		T	E	P	S	A	E	V	D	V	M	G	K	.	N	G	K	W	L	E	V	L	G	C
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		K	W	R	Q	V	D	I	E	V	Y	L	P	S	E	G	R	Y	R	E	T	H	S	C
Template Known Secondary structure			S										G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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