Job Description P08312 Confidence 99.88% Date Thu Jan 5 11:01:02 GMT 2012 Rank 11 Aligned Residues 188 % Identity 21% Template c3bjuB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Resolution 2.31 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	P	P	I	R	I	I	A
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.									.	.
Template Conservation																																																												.	.	.	.	.	.	.	.									.	.
Template Sequence		S	K	I	I	T	Y	I	R	S	F	L	D	E	L	G	F	L	E	I	E	T	P	M	M	N	I	I	P	G	G	A	V	A	K	P	F	I	T	Y	H	N	E	L	D	M	N	L	Y	M	R	I	A	P	E	L	Y	H	K	.	.	.	.	.	.	.	.	M	L	V	V	G	G	I	D	.	.	R	V	Y	E
Template Known Secondary structure															T	T								S			S	S			S	S	S	S								T	T	T	T							S		S						.	.	.	.	.	.	.	.					T	T			.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.									.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.									.	.	.	.	310	.	.	.			.	.	.	.
		190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure										.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	R	V	Y	R	N	D	.	Y	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.
Template Sequence		I	G	R	Q	F	R	N	E	G	I	D	L	T	H	N	P	E	F	T	T	C	E	F	Y	M	A	Y	A	.	.	D	Y	H	D	L	M	E	I	T	E	K	M	V	S	G	M	V	K	H	I	T	G	S	Y	K	V	T	Y	H	P	D	G	P	E	G	Q	A	Y	D	V	D	F	T	P	P	F	R	R	I	N
Template Known Secondary structure												B	T	T	B		S											T		.	.																					T	S	S	S						T	T		T	T	S									S	S
Template Predicted Secondary structure																														.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
																																																																236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	V	E	E	L	E	K	A	L	G	M	K	L	P	E	T	N	L	F	E	T	E	E	T	R	K	I	L	D	D	I	C	V	A	K	A	V	E	C	P	P	P	R	T	T	A	R	L	L	D	K	L	V	G	E	F	L	E	V	T	C	I	N	P	T	F	I	C	D	H	P	Q	I	M	S	P	L	A	K	W
Template Known Secondary structure											T	S					G	G	G	T	T	S														T	T					S																T	G	G	G			S								B	G	G	G		T	T	B		B
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
									254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																													.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	S	A	E	V	D	V	M	G	K	N	G	K	W	L	E	V	L	G	C	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	P	N	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G
Query Conservation		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.												.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																				.	.	.																																																						.	.
Template Sequence		H	R	S	K	E	G	L	T	E	R	F	E	L	F	V	M	K	K	.	.	.	E	I	C	N	A	Y	T	E	L	N	D	P	M	R	Q	R	Q	L	F	E	E	Q	A	K	A	K	A	A	G	D	D	E	A	M	F	I	D	E	N	F	C	T	A	L	E	Y	G	L	P	P	T	A	G	.	.	W	G	M	G
Template Known Secondary structure			S	S	S	T	T	B	B	S							T	T		.	.	.								B																				T	T		T	T	S												T	T	T			S				.	.
Template Predicted Secondary structure																				.	.	.																																																						.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.				.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.			.	.	.	550
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	R	L	T	M	L	R	Y	G	V	T	D	L	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	R	V	A	M	F	L	T	D	S	N	N	I	K	E
Template Known Secondary structure										T	T		S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions