Job Description P08312 Confidence 97.73% Date Thu Jan 5 11:01:02 GMT 2012 Rank 89 Aligned Residues 197 % Identity 19% Template c2pmfA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glycyl-trna synthetase; PDBTitle: the crystal structure of a human glycyl-trna synthetase mutant Resolution 2.85 Å

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		108	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.									.	.	.	140
Predicted Secondary structure															.																	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	T	R	T	I	D	R	I	E	S	F	F	.	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	.	.	.	.	.	.	.	.	Y	H	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.																	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	N	N	I	I	Q	T	W	R	Q	H	F	I	Q	E	E	Q	I	L	E	I	D	C	T	M	L	T	P	E	P	V	L	K	T	S	G	H	V	D	K	F	A	D	F	M	V	K	D	V	K	N	G	E	C	F	R	A	D	H	L	L	K	A	H	L	Q	K	L	M	S	D	K	K	C	S	V	E	K	K
Template Known Secondary structure														T					T								S									T	T		T	T	T	S								B	T	T	T																			S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
																										141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160											.	.	.	.	.	.	.	.	.	170	.	.	.	.	.						.	.	.	.	180	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	.	.	.	.	.	.	.	.	.	.	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	.	.	.	.	.	R	T	M	K	A	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		S	E	M	E	S	V	L	A	Q	L	D	N	Y	G	Q	Q	E	L	A	D	L	F	V	N	Y	N	V	K	S	P	I	T	G	N	D	L	S	P	P	V	S	F	N	L	M	F	K	T	F	I	G	P	G	G	N	M	P	G	Y	L	R	P	E	T	A	Q	G	I	F	L	N	F	K	R	L	L	E	F	N	Q
Template Known Secondary structure									T	T	G	G	G													T	T				S	S	S				B									S						S	S	S	S	S	S						S		S						T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		182		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure			.																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	.	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	.	.	.	.	Y	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation			.																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	L	P	F	A	A	A	Q	I	G	N	S	F	R	N	E	I	S	P	R	S	G	L	I	R	V	R	E	F	T	M	A	E	I	E	H	F	V	D	P	S	E	K	D	H	P	K	F	Q	N	V	A	D	L	H	L	Y	L	Y	S	A	K	A	Q	V	S	G	Q	S	A	R	K	M	R	L	G	D	A	V
Template Known Secondary structure		T		S															S	S			S	T	T	S	S		S													T	T					T	T	G	G	G	T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
						215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.		.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																										.	.	.						.
Query SS confidence		.	.	.	.																																																										.	.	.						.
Query Sequence		.	.	.	.	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P	S	A	E	V	D	V	M	G	K	N	G	K	W	L	E	V	L	G	.	.	.	C	G	M	V	H	.	P	N	V	L	R	N	V	G	I	D
Query Conservation		.	.	.	.																																																										.	.	.						.
Alig confidence		.	.	.	.																															.																	.										.	.	.						.
Template Conservation																																				.																	.
Template Sequence		E	Q	G	V	I	N	N	T	V	L	G	Y	F	I	G	R	I	Y	L	Y	L	T	K	V	G	I	S	P	D	K	L	R	F	R	.	Q	H	M	E	N	A	C	D	C	W	D	A	E	S	K	T	.	S	Y	G	W	I	E	I	V	G	C	A	D	R	S	C	Y	D	L	S	C	H	A	R	R	F	Q	K	T
Template Known Secondary structure			T	T	S	S																				T			G	G	G					.																	.	T	T												S	S		S
Template Predicted Secondary structure																																				.																	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		287	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		P	E	V	Y	S	G	.	.	.	.	F	A	F	G	M	G	M	E	R	L	T	M	L	R
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.
Template Conservation
Template Sequence		L	Y	V	E	E	V	V	P	N	V	I	E	P	S	F	R	L	G	R	I	M	Y	T	V
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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