Job Description P08312 Confidence 100.00% Date Thu Jan 5 11:01:02 GMT 2012 Rank 5 Aligned Residues 236 % Identity 25% Template c2du7C_ PDB info PDB header:ligase Chain: C: PDB Molecule:o-phosphoseryl-trna synthetase; PDBTitle: crystal structure of methanococcus jannacshii o-phosphoseryl-trna2 synthetase Resolution 3.60 Å

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		82	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.												.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	N	A	R	.	.	.	.	L	A	A	E	T	I	D	V	S	L	P	G	R	R	I	E	N	G	G	L	H	P	V	T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	.	.	.	.	.	.	.	.	.	.	.	Y	H	N	F	D	A	L	N	I	P
Query Conservation							.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	W	R	E	T	R	A	L	I	K	D	K	H	I	D	N	K	Y	P	R	L	K	P	V	Y	G	K	P	H	P	V	M	E	T	I	E	R	L	R	Q	A	Y	L	R	M	G	F	E	E	M	I	N	P	V	I	V	D	E	M	E	I	Y	K	Q	F	G	P	E	A	M	A	V	L	D	R	C	F	Y	L
Template Known Secondary structure		S	T	T	T	S				S	S				T	T	T	T	S	S	S	S	S																							T	T	T								S											T		T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		147	.	.	150	.	.	.																										.	.	.	.	.	.	160
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	H	H	P	A	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	D	T	F	W	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	L	P	R	P	D	V	G	L	G	N	E	K	V	E	I	I	K	N	L	G	I	D	I	D	E	E	K	K	E	R	L	R	E	V	L	H	L	Y	K	K	G	A	I	D	G	D	D	L	V	F	E	I	A	K	A	L	N	V	S	N	E	M	G	L	K	V	L	E	T	A	F	P	E	F	K	D	L	K
Template Known Secondary structure										S	S	S	S	T	T	S			S	S		S					S				S	S	S				S				S	S	S	S				S	S	S			S				S	S	S	S			S		S				S	S	S	S	S		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
				161	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.		.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.													.	.	.												.															.		.
Query SS confidence		.	.													.	.	.												.															.		.
Query Sequence		.	.	D	T	T	R	L	L	R	T	Q	T	S	G	.	.	.	V	Q	I	R	T	M	K	A	Q	Q	P	.	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	.	Y	.	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R
Query Conservation		.	.													.	.	.												.															.		.
Alig confidence		.	.													.	.	.												.															.		.
Template Conservation
Template Sequence		P	E	S	T	T	L	T	L	R	S	H	M	T	S	G	W	F	I	T	L	S	S	L	I	K	K	R	K	L	P	L	K	L	F	S	I	D	R	C	F	R	R	E	Q	R	E	D	R	S	H	L	M	S	Y	H	S	A	S	C	V	V	V	G	E	D	V	S	V	D	D	G	K	V	V	A	E	G	L	L	A
Template Known Secondary structure											S	T	T										T	T	T	T	T	S		S	S														S	S		S	S	S			S												T	T															G
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P	S	A	E	V	D	V	M	.	.	.	G	K	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R	Y	G	V
Query Conservation																														.	.	.
Alig confidence																														.	.	.																											.	.	.
Template Conservation																																																											.	.	.
Template Sequence		Q	F	G	F	T	K	F	K	F	K	P	D	E	K	K	S	K	Y	Y	T	P	E	T	Q	T	E	V	Y	A	Y	H	P	K	L	G	E	W	I	E	V	A	T	F	G	V	Y	S	P	I	A	L	A	K	Y	N	I	D	.	.	.	V	P	V	M	N	L	G	L	G	V	E	R	L	A	M	I	I	Y	G	Y
Template Known Secondary structure		G	G	T										T	T			T	T	B		T	T	T									S	S	S	S		S									B								T	T			.	.	.	S								B									T	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.				.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	L	R	S	F	F	E	N	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	V	R	A	M	V	Y	P	Q	F
Template Known Secondary structure		S		S					S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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