Job Description P08312 Confidence 98.99% Date Thu Jan 5 11:01:02 GMT 2012 Rank 49 Aligned Residues 295 % Identity 15% Template c2dq0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																																				.	.
Query SS confidence															.	.																																				.	.
Query Sequence		S	H	L	A	E	L	V	A	S	A	K	A	A	.	.	I	S	Q	A	S	D	V	A	A	L	D	N	V	R	V	E	Y	L	G	K	K	G	H	L	T	L	Q	M	T	T	L	R	E	L	P	.	.	P	E	E	R	P	A	A	G	A	V	I	N	E	A	K	E	Q	V	Q	Q	A	L	N	A	R	K	A	E
Query Conservation															.	.																																				.	.
Alig confidence															.	.																																				.	.																											.
Template Conservation																																																																																.
Template Sequence		E	N	P	E	L	V	K	N	D	L	I	K	R	G	E	L	E	K	V	K	W	V	D	E	I	L	K	L	D	T	E	W	R	T	K	L	K	E	I	N	R	L	R	H	E	R	N	K	I	A	V	E	I	G	K	R	R	K	K	G	E	P	V	D	E	L	L	A	K	S	R	E	I	V	K	R	I	G	.	E
Template Known Secondary structure															T		G	G	G	T																																							T	S				T																.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	S	A	A	L	N	A	R	L	A	A	E	T	I	D	V	S	L	P	G	R	R	I	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	N	E	V	E	E	L	K	K	K	I	D	Y	Y	L	W	R	L	P	N	I	T	H	P	S	V	P	V	G	K	D	E	N	D	N	V	P	I	R	F	W	G	K	A	R	V	W	K	G	H	L	E	R	F	L	E	Q	S	Q	G	K	M	E	Y	E	I	L	E	W	K	P	K	L	H	V	D	L	L	E
Template Known Secondary structure																		T	T	S						T	T	S				S	S	G	G	G								S						G	G	G									T	T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
																104	.	.	.	.	.	110	.										.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	L	H	P	V	T	R	.	.	.	.	.	.	.	.	.	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		I	L	G	G	A	D	F	A	R	A	A	K	V	S	G	S	R	F	Y	Y	L	L	N	E	I	V	I	L	D	L	A	L	I	R	F	A	L	D	R	L	I	E	K	G	F	T	P	V	I	P	P	Y	M	V	R	R	.	.	.	.	.	F	V	E	E	G	S	T	S	F	E	D	F	E	D	V	I	Y	K	V
Template Known Secondary structure			T	T				S							T		T	T																										T	T								S					.	.	.	.	.					T	T	S		T	T					T			B
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.						.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.									.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.
Predicted Secondary structure																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	.	.	.	.	.	.	Q	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	.	.	.	.	.	.	.	.	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	.	.	.	.	F	T	N
Query Conservation																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence																							.	.	.	.	.	.																		.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		E	D	E	D	L	Y	L	I	P	T	A	E	H	P	L	A	G	M	H	A	N	E	I	L	D	G	K	D	L	P	L	L	Y	V	G	V	S	P	C	F	R	K	E	A	G	T	A	G	K	D	T	K	G	I	F	R	V	H	Q	F	H	K	V	E	Q	F	V	Y	S	R	P	E	E	S	W	E	W	H	E	K
Template Known Secondary structure		T	T	S	S					S	S	T							T	T	T	T					T	T	T		S														T	T		S	S		S			S	S	S	S		S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290
Predicted Secondary structure																																							.	.	.											.	.	.																				.	.	.	.	.	.
Query SS confidence																																							.	.	.											.	.	.																				.	.	.	.	.	.
Query Sequence		L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P	S	A	E	V	D	V	.	.	.	M	G	K	N	G	K	W	L	E	V	.	.	.	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	.	.	.	.	.	.	V	Y
Query Conservation																																							.	.	.											.	.	.																				.	.	.	.	.	.
Alig confidence																	.																						.	.	.											.	.	.																				.	.	.	.	.	.
Template Conservation																	.
Template Sequence		I	I	R	N	A	E	E	L	F	Q	E	L	E	I	P	.	Y	R	V	V	N	I	C	T	G	D	L	G	Y	V	A	A	K	K	Y	D	I	E	A	W	M	P	G	Q	G	K	F	R	E	V	V	S	A	S	N	C	T	D	W	Q	A	R	R	L	N	I	R	F	R	D	R	T	D	E	K	P	R	Y	V	H
Template Known Secondary structure													T	T			.								G	G	G	S		S	S		S										T	T	T	T												T	T	T	T					T					S	S	T	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		291	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	F	A	F	G	M	G	M	E	R	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	N	S	T	A	I	A	T	S	R	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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