Job Description P08312 Confidence 98.19% Date Thu Jan 5 11:01:02 GMT 2012 Rank 83 Aligned Residues 198 % Identity 13% Template c2cj9A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of methanosarcina barkeri seryl-trna2 synthetase complexed with an analog of seryladenylate Resolution 2.3 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.									.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.														.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.														.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	R	T	I	D	R	I	E	S	F	F	G	E	L	.	G	F	T	V	A	T	G	P	E	I	E	D	D	.	.	.	.	.	.	.	.	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.														.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.														.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	T	F	E	K	I	V	L	E	E	L	L	E	P	L	G	Y	R	E	M	I	F	P	K	L	V	T	W	E	V	W	M	K	S	G	H	A	K	G	V	Y	P	E	I	Y	Y	V	C	P	P	Q	T	R	D	P	D	Y	W	E	E	V	A	D	Y	Y	K	V	T	H	E	V	P	T	K	L	I	K	E	K
Template Known Secondary structure													T	T	T	T	T	T								S											S	G	G	G	T		G	G	G							B	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.											.											.	.	.	.																	.	.	.	.
Query SS confidence																									.	.	.	.	.											.											.	.	.	.																	.	.	.	.
Query Sequence		W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	.	.	.	.	.	Q	P	P	I	R	I	I	A	P	G	.	R	V	Y	R	N	D	Y	D	Q	T	.	.	.	.	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	.	.	.	.	I	S	F	T	N	L	K
Query Conservation																									.	.	.	.	.											.											.	.	.	.																	.	.	.	.
Alig confidence																									.	.	.	.	.											.											.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		I	A	E	P	I	G	G	M	C	Y	A	Q	C	P	P	F	W	M	Y	V	A	G	E	T	L	P	N	E	E	I	P	V	K	V	F	D	R	S	G	T	S	H	R	Y	E	S	G	G	I	H	G	I	E	R	V	D	E	F	H	R	I	E	I	V	W	I	G	T	K	E	E	V	L	K	C	A	E	E	L	H
Template Known Secondary structure		B		S							S	S	S	S	G	G	G	G	G	G	T	T	T					G	G	G		S							S	S								S	S				T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.												.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																								.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																								.	.	.
Query Sequence		G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	.	.	.	.	.	.	.	.	.	.	.	S	Y	F	P	F	T	E	P	S	A	E	V	D	V	M	G	K	.	.	.	.	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	.	.	.	D
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																								.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																								.	.	.
Template Conservation
Template Sequence		D	R	Y	M	H	I	F	N	D	I	L	D	I	E	W	R	K	A	R	V	T	P	W	F	M	A	Q	E	G	L	L	G	L	A	E	E	N	T	V	G	T	T	D	Y	E	A	C	L	P	Y	R	G	P	D	G	E	W	L	E	F	Q	N	V	S	I	N	G	D	K	Y	P	K	G	F	N	V	K	L	Q	S
Template Known Secondary structure											T	S										S							T	T			S			S	S	S	S											G	G	G		T	T														T							T				T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	E	L	W	S	G	C	S	G	V	G	L	E	R	W	A	A	V	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions