Job Description P08312 Confidence 96.63% Date Thu Jan 5 11:01:02 GMT 2012 Rank 93 Aligned Residues 179 % Identity 17% Template c1yfsB_ PDB info PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine Resolution 2.08 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.
Predicted Secondary structure																					.																																																										.	.
Query SS confidence																					.																																																										.	.
Query Sequence		T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	.	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	P	P	I	.	.	R
Query Conservation																					.																																																										.	.
Alig confidence																					.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.											.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		H	E	I	R	E	L	F	L	S	F	F	E	K	K	G	H	T	R	V	K	S	A	P	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	N	D	P	T	L	L	F	V	N	A	G	M	V	P	F	K	.	.	.	.	.	.	.	.	N	V	F	L	G	L	E	K	R	P	Y	K	R
Template Known Secondary structure															T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		T	T		S	S			S	T	T	G	G	G		.	.	.	.	.	.	.	.					S	S	S			S		S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.																	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.	.	.	.	.	60
		187	.	.	190	.	.	.	.	.						.	.		.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure											.	.	.	.	.			.		.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.			.		.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	A	P	G	R	V	Y	R	.	.	.	.	.	N	D	.	Y	.	.	.	.	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.			.		.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.			.		.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	S	C	Q	K	C	L	R	V	S	G	K	H	N	D	L	E	Q	V	G	Y	T	S	R	H	H	T	F	F	E	M	L	G	N	F	S	F	G	D	Y	F	K	K	E	A	I	E	Y	A	W	E	F	V	T	E	V	L	K	L	P	K	E	K	L	Y	V	S	V	Y	K	D	D	E	E	A	Y	R	I	W
Template Known Secondary structure													T	T				G	G	G	T	T	T	S	S	S			S											S	S																T	T	S				G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
																		244	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.						.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.														.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.														.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	S	Y	F	P	F	T	.	.	.	.	.	E	P	S	A	E	V	D	V	M	G	K	N	G	.	.	.	.	.	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.														.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		N	E	H	I	G	I	P	S	E	R	I	W	R	L	G	E	E	D	N	F	W	Q	M	G	D	V	G	P	C	G	P	S	S	E	I	Y	V	D	R	G	E	E	Y	E	G	D	E	R	Y	L	E	I	W	N	L	V	F	M	Q	Y	N	R	D	E	N	G	V	L	T	P	L	P	H	P	N	I	D	T	G	M
Template Known Secondary structure			T	T	T				G	G	G													S	S	S	S															T	T	S																					T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	E	R	L	T	M	L	R	Y	G	V	T	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	E	R	I	A	S	V	L	Q	G	K	N	S	N
Template Known Secondary structure											T	T		S	S	G
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions