Job Description P08312 Confidence 98.71% Date Thu Jan 5 11:01:02 GMT 2012 Rank 67 Aligned Residues 298 % Identity 14% Template c1wleB_ PDB info PDB header:ligase Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate Resolution 1.65 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	H	L	A	E	L	V	A	S	A	K	A	A	I	S	Q	A	S	D	V	A	A	L	D	N	V	R	V	E	Y	L	G	K	K	G	H	L	T	L	Q	M	T	T	L	R	E	L	P	P	E	E	R	P	A	A	G	A	V	I	N	E	A	K	E	Q	V	Q	Q	A	L	N	A	R	K	A	E	L	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	G	I	I	S	T	W	Q	E	L	R	Q	L	R	E	Q	I	R	S	L	E	E	E	K	E	A	V	T	E	A	V	R	A	L	V	V	N	Q	D	N	S	Q	V	Q	Q	D	P	Q	Y	Q	S	L	R	A	R	G	R	E	I	R	K	Q	L	T	L	L	Y	P	K	E	A	Q	L	E	E	Q	F	Y	L
Template Known Secondary structure																														T					T	S	S	S	S	S	T	T	T	T	G	G	G	S	T	T	S	S	S	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		81	.	.	.	.																						.	.	.	.	90	.	.	.	.	.	.																								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		A	A	L	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	A	E	T	I	D	V	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	R	I	E	N	G	G	L	H	P	V	T	R	.	T	I	D	R
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		R	A	L	R	L	P	N	Q	T	H	P	D	V	P	V	G	D	E	S	Q	A	R	V	L	H	V	V	G	D	K	P	A	F	S	F	Q	P	R	G	H	L	E	I	A	E	K	L	D	I	I	R	Q	K	R	L	S	H	V	S	G	H	R	S	Y	Y	L	R	G	A	G	A	L	L	Q	H	G	L	V	N	F
Template Known Secondary structure				T	T	S						T	T				S	S	G	G	G								S						S	S												T	T					T	T		T	T	T	T		T	T						T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.																					.	.	.	.	.
Query SS confidence																																																.	.	.	.																					.	.	.	.	.
Query Sequence		I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	.	.	.	.	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	.	.	.	.	.	Q	P	P	I	R
Query Conservation																																																.	.	.	.																					.	.	.	.	.
Alig confidence																																						.	.	.	.							.	.	.	.																					.	.	.	.	.
Template Conservation																																						.	.	.	.
Template Sequence		T	L	N	K	L	I	H	R	G	F	T	P	M	T	V	P	D	L	L	R	G	V	V	F	E	G	C	G	M	T	P	N	A	K	P	S	.	.	.	.	Q	I	Y	N	I	D	P	S	R	F	E	D	L	N	L	A	G	T	A	E	V	G	L	A	G	Y	F	M	D	H	S	V	A	F	R	D	L	P	I	R
Template Known Secondary structure									T	T								S											T			T	T	S	S	S		.	.	.	.	S	S		B			T	T	T	S	S	S					S	S										T	T					G	G	G		S
Template Predicted Secondary structure																																						.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		I	I	A	P	G	R	V	Y	R	N	D	Y	D	.	.	.	.	.	.	.	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	.	.	.	.	.	.	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P
Query Conservation															.	.	.	.	.	.	.																			.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																			.	.	.	.	.	.																					.
Template Conservation																																																																		.
Template Sequence		M	V	C	S	S	T	C	Y	R	A	E	T	D	T	G	K	E	P	W	G	L	Y	R	V	H	H	F	T	K	V	E	M	F	G	V	T	G	P	G	L	E	Q	S	S	E	L	L	E	E	F	L	S	L	Q	M	E	I	L	T	E	L	G	L	H	.	F	R	V	L	D	M	P	T	Q	E	L	G	L	P	A
Template Known Secondary structure														S	S					S	S	S	T	T		S													S	S																						T	T			.								G	G	G	S	T	T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		254	.	.	.	.	.				260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure								.	.	.										.	.	.																					.	.	.	.	.
Query SS confidence								.	.	.										.	.	.																					.	.	.	.	.
Query Sequence		S	A	E	V	D	V	.	.	.	M	G	K	N	G	K	W	L	E	.	.	.	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	.	.	.	.	.	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T
Query Conservation								.	.	.										.	.	.																					.	.	.	.	.
Alig confidence								.	.	.										.	.	.																					.	.	.	.	.
Template Conservation
Template Sequence		Y	R	K	F	D	I	E	A	W	M	P	G	R	G	R	F	G	E	V	T	S	A	S	N	C	T	D	F	Q	S	R	R	L	H	I	M	F	Q	T	E	A	G	E	L	Q	F	A	H	T	V	N	A	T	G	C	A	V	P	R	L	L
Template Known Secondary structure		S										T	T	T	T												T	T							T						T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions