Job Description P08312 Confidence 98.88% Date Thu Jan 5 11:01:02 GMT 2012 Rank 54 Aligned Residues 188 % Identity 17% Template c1sryB_ PDB info PDB header:ligase(synthetase) Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution Resolution 2.50 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.
Predicted Secondary structure																																																																											.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.
Query Sequence		T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	.	.	.	.	.	.	P
Query Conservation																																																																											.	.	.	.	.	.
Alig confidence																													.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		L	A	L	L	R	F	A	M	D	F	M	A	R	R	G	F	L	P	M	T	L	P	S	Y	A	R	E	.	.	.	.	.	K	A	F	L	G	T	G	H	F	P	A	Y	R	D	Q	V	W	A	I	A	E	T	D	L	Y	L	T	G	T	A	E	V	V	L	N	A	L	H	S	G	E	I	L	P	Y	E	A	L
Template Known Secondary structure														T	T	T								S					.	.	.	.	.							T		T	T	T	T	G	G	G			B		T	T	S	S					S	S	T							T	T	T	T					G	G	G
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.									.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.														.					.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.														.					.	.	.	.	.
Query Sequence		P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	T	.	.	.	.	.	.	.	.	H	T	P	M	F	H	Q	M	E	G	L	I	V	.	D	T	N	I	.	.	.	.	.	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P
Query Conservation																				.	.	.	.	.	.	.	.														.					.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.														.					.	.	.	.	.																				.
Template Conservation																																																																						.
Template Sequence		P	L	R	Y	A	G	Y	A	P	A	F	R	S	E	A	G	S	F	G	K	D	V	R	G	L	M	R	V	H	Q	F	H	K	V	E	Q	Y	V	L	T	E	A	S	L	E	A	S	D	R	A	F	Q	E	L	L	E	N	A	E	E	I	L	R	L	L	E	L	P	.	Y	R	L	V	E	V	A	T	G	D	M
Template Known Secondary structure		S															S	S		T	T	S	S		S	S	S	S		S													S																								T			.								T	T	T	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.
		250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure												.	.	.														.	.	.																	.	.	.	.	.
Query SS confidence												.	.	.														.	.	.																	.	.	.	.	.
Query Sequence		F	T	E	P	S	A	E	V	D	V	.	.	.	M	G	K	N	G	K	W	L	E	V	L	G	C	.	.	.	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	.	.	.	.	.	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T
Query Conservation												.	.	.														.	.	.																	.	.	.	.	.
Alig confidence												.	.	.														.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		G	P	G	K	W	R	Q	V	D	I	E	V	Y	L	P	S	E	G	R	Y	R	E	T	H	S	C	S	A	L	L	D	W	Q	A	R	R	A	N	L	R	Y	R	D	P	E	G	R	V	R	Y	A	Y	T	L	N	N	T	A	L	A	T	P	R	I	L
Template Known Secondary structure			T	T		S										G	G	G	T													T	T	T					T						T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions