Job Description P08312 Confidence 98.42% Date Thu Jan 5 11:01:02 GMT 2012 Rank 78 Aligned Residues 174 % Identity 20% Template c1qe0B_ PDB info PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of apo s. aureus histidyl-trna synthetase Resolution 2.70 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.																														.	.	.	.																	.	.	.	.
Query SS confidence																												.																														.	.	.	.																	.	.	.	.
Query Sequence		V	T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	.	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	.	.	.	.	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	.	.	.	.
Query Conservation																												.																														.	.	.	.																	.	.	.	.
Alig confidence																												.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.																	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	R	Y	I	E	N	Q	L	D	E	L	M	T	F	Y	N	Y	K	E	I	R	T	P	I	F	E	S	T	D	L	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	M	Y	T	F	K	D	K	G	D	R	S	I	T	L	R	P	E	G	T	A	A	V	V	R	S	Y	I	E	H	K	M
Template Known Secondary structure																	T								S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S											S		S											T	T	G
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.																																												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	A	Q	Q	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	.	.	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																																												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																			.	.	.	.	.	.																				.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		Q	G	N	P	N	Q	P	I	K	L	Y	Y	N	G	P	M	F	R	Y	Y	.	.	.	.	.	.	R	Q	F	N	Q	F	G	V	E	A	I	G	A	E	N	P	S	V	D	A	E	V	L	A	M	V	M	H	I	Y	Q	S	F	G	L	K	H	L	K	L	V	I	N	S	V	G	D	M	A	S	S	K	A	Y
Template Known Secondary structure		G	G		S	S		S														.	.	.	.	.	.												S																				T	T	T														S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
																	242	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																				.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																				.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	R	P	S	Y	F	P	.	.	.	.	F	T	E	P	S	A	E	V	D	V	M	G	K	N	G	K	W	L	E	.	.	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																				.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																				.	.																			.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		Y	E	Q	V	K	A	Y	L	D	D	L	G	I	P	Y	T	E	D	P	N	L	V	R	G	L	D	Y	Y	T	H	T	A	F	E	L	M	M	D	N	P	N	Y	D	G	A	I	T	T	L	C	G	G	G	R	Y	N	G	L	L	E	L	L	D	G	P	S	.	.	.	E	T	G	I	G	F	A	L	S	I	E
Template Known Secondary structure													T							T	T						T	T			S										T	T	S	T	T	S												S					T	T				.	.	.
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300				.	.	.	.	.	.	.	.	.	310	.
		301	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	T	M	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	L	L	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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