Job Description P08312 Confidence 98.81% Date Thu Jan 5 11:01:02 GMT 2012 Rank 59 Aligned Residues 192 % Identity 17% Template c1nj8C_ PDB info PDB header:ligase Chain: C: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii Resolution 3.20 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160									.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.
Query Sequence		T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	.	.	.	.	.	.	.	.	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q
Query Conservation																																																					.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		R	Y	T	F	E	I	I	R	N	L	L	D	E	S	G	H	D	E	A	L	F	P	M	L	I	P	E	.	.	.	.	D	L	L	A	K	E	A	E	H	I	K	G	F	E	D	E	V	Y	W	V	T	H	G	G	K	T	Q	L	D	V	K	L	A	L	R	P	T	S	E	T	P	I	Y	Y	M	M	K	L	W
Template Known Secondary structure															T	T								S					.	.	.	.								S	S	S	G	G	G	G	G	G							S	S	S	S										S	S	S										T	T
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
							182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																					.	.	.	.									.										.	.	.	.	.																												.
Query SS confidence		.	.	.	.	.																					.	.	.	.									.										.	.	.	.	.																												.
Query Sequence		.	.	.	.	.	Q	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	T	.	.	.	.	H	T	P	M	F	H	Q	M	.	E	G	L	I	V	D	T	N	I	.	.	.	.	.	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	F	E	E	D	L	Q	I	R	F	R	P	.
Query Conservation		.	.	.	.	.																					.	.	.	.									.										.	.	.	.	.																												.
Alig confidence		.	.	.	.	.																					.	.	.	.									.										.	.	.	.	.																												.
Template Conservation
Template Sequence		V	K	V	H	T	D	L	P	I	K	I	Y	Q	I	V	N	T	F	R	Y	E	T	K	H	T	R	P	L	I	R	L	R	E	I	M	T	F	K	E	A	H	T	A	H	S	T	K	E	E	A	E	N	Q	V	K	E	A	I	S	I	Y	K	K	F	F	D	T	L	G	I	P	Y	L	I	S	K	R	P	E	W
Template Known Secondary structure				B	T	T	S																	S			B	T	T	T	B		S	S		S										S	S																							T										T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.								.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.
Query Sequence		S	Y	F	P	F	T	E	P	S	A	E	V	D	V	M	G	K	N	G	K	W	L	E	V	L	G	C	G	M	V	H	P	N	V	L	R	N	V	G	I	D	.	.	.	.	.	.	.	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R
Query Conservation																																											.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.													.
Template Conservation																																																														.
Template Sequence		D	K	F	P	G	A	E	Y	T	M	A	F	D	T	I	F	P	D	G	R	T	M	Q	I	A	T	V	H	N	L	G	Q	N	F	S	K	T	F	E	I	I	F	E	T	P	T	G	D	K	D	Y	A	Y	Q	T	C	Y	G	I	S	.	D	R	V	I	A	S	I
Template Known Secondary structure		S			T	T		S										T	T	S													T						T	T						T	T	S	S													.	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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