Job Description P08312 Confidence 98.64% Date Thu Jan 5 11:01:02 GMT 2012 Rank 71 Aligned Residues 165 % Identity 14% Template c1ggmB_ PDB info PDB header:ligase Chain: B: PDB Molecule:protein (glycyl-trna synthetase); PDBTitle: glycyl-trna synthetase from thermus thermophilus complexed with2 glycyl-adenylate Resolution 3.40 Å

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		109	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160															.	.	.	.	.
Predicted Secondary structure												.	.																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	R	T	I	D	R	I	E	S	.	.	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	.	.	.	.	.	.	.	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	T	R	L
Query Conservation												.	.																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	N	L	K	Q	A	W	W	R	R	N	V	Y	E	R	D	D	M	E	G	L	D	A	S	V	L	T	H	R	L	V	L	H	Y	S	G	H	E	A	T	F	A	D	P	M	V	D	N	A	K	A	R	Y	W	T	P	P	R	Y	F	N	M	M	F	Q	D	L	R	G	P	R	G	G	R	G	L	L	A	Y
Template Known Secondary structure															T	S		S	S								S										T	S	T	T	G	G	G		S		B				S	S	S							B					S						S	S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																	.	.	.	.	.	.																						.	.	.	.																.	.	.	.
Query SS confidence																	.	.	.	.	.	.																						.	.	.	.																.	.	.	.
Query Sequence		L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	.	.	.	.	.	.	Q	Q	P	P	I	R	I	I	A	P	G	R	V	Y	R	N	D	Y	D	Q	T	.	.	.	.	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	.	.	.	.	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L
Query Conservation																	.	.	.	.	.	.																						.	.	.	.																.	.	.	.
Alig confidence																	.	.	.	.	.	.																						.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		L	R	P	E	T	A	Q	G	I	F	V	N	F	K	N	V	L	D	A	T	S	R	K	L	G	F	G	I	A	Q	I	G	K	A	F	R	N	E	I	T	P	R	N	F	I	F	R	V	R	E	F	E	Q	M	E	I	E	Y	F	V	R	P	G	E	D	E	Y	W	H	R	Y	W	V	E	E	R	L	K	W	W
Template Known Secondary structure				S	S	T																			S	S														S	S		B	T	T	T	T	B		S													G	G	G
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		R	N	F	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	T	E	P	S	A	E	V	.	.	.	D	V	M	G	K	N	G	K	W	L	E	V	L	G	C	G
Query Conservation																												.	.	.
Alig confidence																												.	.	.
Template Conservation
Template Sequence		Q	E	M	G	L	S	R	E	N	L	V	P	Y	Q	Q	P	P	E	S	S	A	H	Y	A	K	A	T	V	D	I	L	Y	R	F	P	H	G	S	L	E	L	E	G	I	A
Template Known Secondary structure				T	T			G	G	G								T	T	T			T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions