Job Description P08312 Confidence 99.79% Date Thu Jan 5 11:01:02 GMT 2012 Rank 19 Aligned Residues 187 % Identity 20% Template c1asyA_ PDB info PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Resolution 2.90 Å

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		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	T	I	D	R	I	E	S	F	F	G	E	L	G	F	T	V	A	T	G	P	E	I	E	D	D	Y	H	N	F	D	A	L	N	I	P	G	H	H	P	A	R	A	D	H	D	T	F	W	F	D	T	T	R	L	L	R	T	Q	T	S	G	V	Q	I	R	T	M	K	A	Q	Q	P	P	I	R	I	I	A
Query Conservation
Alig confidence																																																.	.											.	.	.	.	.	.	.	.									.	.
Template Conservation																																																.	.											.	.	.	.	.	.	.	.									.	.
Template Sequence		A	G	V	C	E	L	F	R	E	Y	L	A	T	K	K	F	T	E	V	H	T	P	K	L	L	G	A	P	S	E	G	G	S	S	V	F	E	V	T	Y	F	K	G	K	A	Y	.	.	L	A	Q	S	P	Q	F	N	K	Q	.	.	.	.	.	.	.	.	Q	L	I	V	A	D	F	E	.	.	R	V	Y	E
Template Known Secondary structure															T	T								S			S	S		S	T	T	T	T	S			B			B	T	T	B				.	.			S		S						.	.	.	.	.	.	.	.					T	T			.	.
Template Predicted Secondary structure																																																.	.											.	.	.	.	.	.	.	.									.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.									.	.	310	.	.	.	.	.			.	.	.	.
		190	.	.	.	.	.	.	.		.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure										.				.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.				.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	R	V	Y	R	N	D	.	Y	D	Q	.	T	H	T	P	M	F	H	Q	M	E	G	L	I	V	D	T	N	I	S	F	T	N	L	K	G	T	L	H	D	F	L	R	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.				.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.				.																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		I	G	P	V	F	R	A	E	N	S	N	T	H	R	H	M	T	E	F	T	G	L	D	M	E	M	A	F	E	E	.	H	Y	H	E	V	L	D	T	L	S	E	L	F	V	F	I	F	S	E	L	P	K	R	F	A	H	E	I	E	L	V	R	K	Q	Y	P	V	E	E	F	K	L	P	K	D	G	K	M	V
Template Known Secondary structure									S					S	S			S	S											S	S	.		T																															T	T	S									S	S	S
Template Predicted Secondary structure																																.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
																																											235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.								.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	E	D	L	Q	I	R	F	R	P	S	Y	F	P	F	.	T	E	P	S	.	.	.	.	.	.	.	A	E	V	D	V	M	G	K	N	G	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.	.	.	.	.								.			.
Template Conservation																																																																														.			.
Template Sequence		R	L	T	Y	K	E	G	I	E	M	L	R	A	A	G	K	E	I	G	D	F	E	D	L	S	T	E	N	E	K	F	L	G	K	L	V	R	D	K	Y	D	T	D	F	Y	I	L	D	K	F	P	L	E	I	R	P	F	Y	T	M	P	D	P	A	N	P	K	Y	S	N	S	Y	D	F	F	M	.	R	G	.
Template Known Secondary structure															T	T					S	S	S																					S								B	T	T	S	S		T	T	B		B		S	S		T	T	B	B	S							.	T	T	.
Template Predicted Secondary structure																																																																														.			.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.
		266	.	.	.	270	.	.	.	.																	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.
Query Sequence		W	L	E	V	L	G	C	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	P	N	.	.	.	.	.	.	V	L	R	N	V	G	I	D	P	E	V	Y	S	G	F	A	F	G	M	G	M	E	R	L	T	M	L	R	Y	G	V	T	D	L	R	S
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.
Alig confidence		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.															.	.
Template Conservation		.																																																	.	.
Template Sequence		.	E	E	I	L	S	G	A	Q	R	I	H	D	H	A	L	L	Q	E	R	M	K	A	H	G	L	S	P	E	D	P	G	L	K	D	Y	C	D	G	F	S	Y	G	C	P	P	H	A	G	.	.	G	G	I	G	L	E	R	V	V	M	F	Y	L	D	L	K	N	I	R	R
Template Known Secondary structure		.																							T	T			T	T	S									T	T	T	T								.	.														T		S		G	G	G
Template Predicted Secondary structure		.																																																	.	.
Template SS confidence
			477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.			.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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