Job Description P0AFV0 Confidence 99.90% Date Thu Jan 5 11:27:20 GMT 2012 Rank 5 Aligned Residues 237 % Identity 17% Template c3h9iB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli Resolution 3.40 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure															.	.	.																			.
Query SS confidence															.	.	.																			.
Query Sequence		N	Y	N	H	P	Y	T	F	T	A	Q	K	A	.	.	.	V	I	A	I	P	I	T	P	Q	V	T	G	I	V	T	E	V	T	.	D	K	N	N	Q	L	I	Q	K	G	E	V	L	F	K	L	D	P	V	R	Y	Q	A	R	V	D	R	L	Q	A	D	L	M	T	A	T	H	N	I	K	T	L	R	A	Q
Query Conservation															.	.	.																			.
Alig confidence															.	.	.																			.
Template Conservation
Template Sequence		P	L	T	F	A	Q	S	F	P	A	N	V	S	Y	N	E	Y	Q	Y	A	I	V	Q	A	R	A	A	G	F	I	D	K	V	Y	P	L	T	V	G	D	K	V	Q	K	G	T	P	L	L	D	L	T	I	P	D	W	V	E	A	Q	S	E	Y	L	L	L	R	E	T	G	G	T	A	T	Q	T	E	G	I	L
Template Known Secondary structure															B		T	T									S									S			S	S					T	T																								S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	A	Q	A	N	T	T	Q	V	S	A	E	R	D	R	L	F	K	N	Y	Q	R	Y	L	K	G	S	Q	A	A	V	N	P	F	S	E	R	D	I	D	D	A	R	Q	N	F	L	A	Q	D	A	L	V	K	G	S	V	A	E	Q	A	Q	I	Q	S	Q	L	D	S	M	V	N	G	E	Q	S	Q	I
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	G	M	P
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.																																																																								.	.	.	.	190	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	L	R	A	Q	L	T	E	A	K	Y	N	L	E	Q	T	V	I	R	A	P	S	N	G	Y	V	T	Q	V	L	I	R	P	G	T	Y	A	A	A	L	P	L	R	P	V	M	V	F	I	P	E	Q	K	R	Q	I	V	A	Q	F	R	Q	N	S	L	L	R	L	K	P	G	D	D	A	E	V	V	F	N
Query Conservation
Alig confidence																																											.	.
Template Conservation																																											.	.
Template Sequence		E	A	D	I	R	R	L	I	A	T	Q	K	I	Q	T	R	F	T	L	K	A	P	I	D	G	V	I	T	A	F	D	L	R	A	G	M	N	I	A	K	D	.	.	N	V	V	A	K	I	Q	G	M	D	P	V	W	V	T	A	A	I	P	E	S	I	A	W	L	V	K	D	A	S	Q	F	T	L	T	V	P
Template Known Secondary structure																							S	S					S						S	S					S		.	.										S																			G	G	G						S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	G	Q	V	F	H	G	K	L	T	S	I	L	P	V	V	P	G	G	S	Y	Q	A	Q	G	V	L	Q	S	L	T	V	V	P	G	T	D	G	V	L	G	T	I	E	L	D	P	N	D	D	I	D	A	L	P	D	G	I	Y	A	Q	V	A	V	Y	S	D	H	F	S	H	V	S	V	M	R	K	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	P	D	K	T	L	T	I	R	K	W	T	L	L	P	G	V	D	A	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	L	Q	L	R	L	E	V	D	N	A	D	E	A	L	K	P	G	M	N	A	W	L	Q	L	N	T	A	S	E	P	M	L	L	I	P	S	Q	A
Template Known Secondary structure		S				S															T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T												S	S				T	T												S							G	G	G
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		364	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	R	M	T	S	W	M	H	Y	L	Y	L
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		L	I	D	T	G	S	E	.	Q	R	V	I	T
Template Known Secondary structure			B		S	S	S		.
Template Predicted Secondary structure									.
Template SS confidence
		332	.	.	.	.	.	.		.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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