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Job DescriptionP0AFV0
Confidence99.97%DateThu Jan 5 11:27:20 GMT 2012
Rank1Aligned Residues260
% Identity23%Templatec3fppB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca
Resolution2.99 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50......... 60.........70.........80.........90.........100.........110.........120......
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Query Sequence  NYNHPYTFTAQK. AVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTE
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Template Sequence  DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEAT. . . . . . . . . . . . . . LME
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   45....50.........60.........70.........80.........90.........100....... ..110
 
   127..130.........140.........150.........160.........170.........180.........190.........200......
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Query Sequence  AQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSL
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Template Sequence  LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIG. . . . . . . . . . . . . . . . . . . . TIDAQIKRN
Template Known Secondary structure  S

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   111........120.........130.........140.........150.........160. ........170
 
   207..210.........220.........230.........240....... ..250.........260.........270.........280.....
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Query Sequence  RAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLR. PVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNAL
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Template Sequence  QASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGD
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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   286...290.........300.........310.........320.........330.........340.........350.......
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Query Sequence  PGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHV
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Template Sequence  QLTRYEGQIKDVLP. . . . . . . . . . . . . . . . TPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNV
Template Known Secondary structure  SS





B
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   251........260.... .....270.........280.........290.........300......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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