Job Description P0AFV0 Confidence 45.04% Date Thu Jan 5 11:27:20 GMT 2012 Rank 107 Aligned Residues 87 % Identity 9% Template c2v4hA_ PDB info PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex Resolution 2.9 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		I	Q	K	G	E	V	L	F	K	L	D	P	V	R	Y	Q	A	R	V	D	R	L	Q	A	D	L	M	T	A	T	H	N	I	K	T	L	R	A	Q	L	T	E	A	Q	.	.	.	A	N	T	T	Q	V	S	A	E	R	D	R	L	F	K	N	Y	Q	R	Y	L	K	G	S	Q	A	A	V	N	P	F	S	E
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence		V	P	R	G	S	H	M	A	S	M	Q	L	E	D	L	R	Q	Q	L	Q	Q	A	E	E	A	L	V	A	K	Q	E	L	I	D	K	L	K	E	E	A	E	Q	H	K	I	V	M	E	T	V	P	V	L	K	A	Q	A	D	I	Y	K	A	D	F	Q	A	E	R	H	A	R	E	K	L	V	E	K	K	E	Y
Template Known Secondary structure				T	T			S	S																																								T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		162	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	I	D	D	A	R	Q	N	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	E	Q	L	E	Q	L	Q	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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