Job Description P0AFV0 Confidence 62.14% Date Thu Jan 5 11:27:20 GMT 2012 Rank 85 Aligned Residues 97 % Identity 11% Template c2rdeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vca0042; PDBTitle: crystal structure of vca0042 complexed with c-di-gmp Resolution 1.92 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		261	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.
Predicted Secondary structure													.																																																															.	.	.
Query SS confidence													.																																																															.	.	.
Query Sequence		V	A	Q	F	R	Q	N	S	L	L	R	.	L	K	P	G	D	D	A	E	V	V	F	N	A	L	P	G	Q	V	F	H	G	K	L	T	S	I	L	P	V	V	P	G	G	S	Y	Q	A	Q	G	V	L	Q	S	L	T	V	V	P	G	T	D	G	V	L	G	T	I	E	L	D	P	N	.	.	.	D	D	I
Query Conservation													.																																																															.	.	.
Alig confidence													.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	T	I	N	S	T	D	A	L	A	M	V	E	H	S	S	E	L	T	L	S	I	T	T	P	V	G	T	K	F	V	C	R	T	P	F	I	G	T	H	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	L	L	V	E	M	P	K	I	S	A	D	D	L	Q
Template Known Secondary structure												T	T	S		T	T										S	S	S														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.																						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		D	A	L	P	D	G	I	Y	A	Q	V	A	V	Y	S	D	H	F	.	.	S	H	V	S	V	M	R	K	V	L	L	R	M	T	S	W	M	H	Y	L	Y	L	D	H
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		Y	F	F	Q	E	G	F	W	M	N	I	R	A	I	S	P	R	G	E	G	A	L	I	H	F	R	S	Q	L	M	H	I	L	Q	E	P	V	P	M	A	F	L	S	I
Template Known Secondary structure						T	T											S	B	T																S	S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions