Job Description P0AFV0 Confidence 99.91% Date Thu Jan 5 11:27:20 GMT 2012 Rank 4 Aligned Residues 217 % Identity 16% Template c1t5eB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:multidrug resistance protein mexa; PDBTitle: the structure of mexa Resolution 3.00 Å

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		53	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		Y	T	F	T	A	Q	K	A	V	.	I	A	I	P	I	T	P	Q	V	T	G	I	V	T	E	V	T	D	K	N	N	Q	L	I	Q	K	G	E	V	L	F	K	L	D	P	V	R	Y	Q	A	R	V	D	R	L	Q	A	D	L	M	T	A	T	H	N	I	K	T	L	R	A	Q	L	T	E	A	Q	A	N	T
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		T	E	L	P	G	R	T	N	A	F	R	I	A	E	V	R	P	Q	V	N	G	I	I	L	K	R	L	F	K	E	G	S	D	V	K	A	G	Q	Q	L	Y	Q	I	D	P	A	T	Y	E	A	D	Y	Q	S	A	Q	A	N	L	A	S	T	Q	E	Q	A	Q	R	Y	K	L	L	V	A	D	Q	A	V	S	K
Template Known Secondary structure											S								S	S									S		T	T					T	T																																						T			S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	V	S	A	E	R	D	R	L	F	K	N	Y	Q	R	Y	L	K	G	S	Q	A	A	V	N	P	F	S	E	R	D	I	D	D	A	R	Q	N	F	L	A	Q	D	A	L	V	K	G	S	V	A	E	Q	A	Q	I	Q	S	Q	L	D	S	M	V	N	G	E	Q	S	Q	I	V	S	L	R	A	Q	L	T
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	Y	A	D	A	N	A	A	Y	L	Q	S	K	A	A	V	E	Q	A	R	I	N	L	R	Y	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																											T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.														.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	K	Y	N	L	E	Q	T	V	I	R	A	P	S	N	G	Y	V	T	Q	V	L	I	R	P	G	T	Y	A	A	A	L	P	L	R	P	V	M	V	F	I	P	E	Q	K	R	Q	I	V	A	Q	F	R	Q	N	S	L	L	R	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	D	D	A
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	V	L	S	P	I	S	G	R	I	G	R	S	A	V	T	E	G	A	L	V	T	N	G	Q	A	N	A	M	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	P	S	T	A	L	L	R	L	R	R	E	L	A	S	G	Q	L	E	R	A	G	D	N	A	A	K	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.				S	S	S							S	S		T	T					T	T		S	S		S							S	S																					T	T		S					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	V	F	N	A	L	P	G	Q	V	F	H	G	K	L	T	S	I	L	P	V	V	P	G	G	S	Y	Q	A	Q	G	V	L	Q	S	L	T	V	V	P	G	T	D	G	V	L	G	T	I	E	L	D	P	N	D	D	I	D	A	L	P	D	G	I	Y	A	Q	V	A	V
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	K	L	E	D	G	S	Q	Y	P	L	E	G	R	L	E	F	S	E	V	S	V	D	E	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	T	I	R	A	V	F	P	N	P	N	N	E	L	L	P	G	M	F	V	H	A	Q	L
Template Known Secondary structure						T	T	S												S						T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											G	G	G				T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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