Job Description P0AFV0 Confidence 22.23% Date Thu Jan 5 11:27:20 GMT 2012 Rank 143 Aligned Residues 92 % Identity 12% Template c1go3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: structure of an archeal homolog of the eukaryotic rna2 polymerase ii rpb4/rpb7 complex Resolution 1.75 Å

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		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		E	V	V	F	N	A	L	P	G	Q	V	F	H	G	K	L	T	S	I	L	P	V	V	P	G	G	S	Y	Q	A	Q	G	V	L	Q	S	L	T	V	V	P	G	T	D	G	V	L	G	T	I	E	L	D	P	N	D	D	I	D	A	L	P	D	G	I	Y	A	Q	V	A	V	Y	S	.	.	.	D	H	F	S
Query Conservation																																																																											.	.	.
Alig confidence																																																																											.	.	.
Template Conservation
Template Sequence		T	L	V	Y	I	P	E	M	Y	E	L	I	E	G	E	V	V	D	V	V	E	F	G	S	F	V	R	L	G	P	L	D	G	L	I	H	V	S	Q	I	M	D	D	Y	V	S	Y	D	P	K	A	I	I	G	K	E	T	G	K	V	L	E	I	G	D	Y	V	R	A	R	I	V	A	I	S	L	K	A	S	K
Template Known Secondary structure									T	T												T	T							S	S	S						G	G	G	S		S	S												T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	S	V	M	R	K	V	L	L	R	M	T	S	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	L	T	M	R	Q	P	Y	L	G	K	L	E	W
Template Known Secondary structure								S	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions