Job Description P0AG78 Confidence 97.64% Date Wed Jan 25 15:20:33 GMT 2012 Rank 92 Aligned Residues 237 % Identity 12% Template d2v3qa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.89

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.											.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	.	.	.	.	.	.	.	.	.	.	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	.	.	.	.	.	.	.	.	.	R	G	R	I	D	K	E	W	I	K	R	L	P	D	N	S	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	L	T	A	G	F	A	P	Y	I	G	V	G	S	G	K	G	K	I	A	F	L	E	N	K	Y	N	Q	F	G	T	D	T	T	K	N	V	H	W	A	G	S	D	S	K	L	T	A	T	E	L	A	T	Y	A	A	D	K	E	P	G	W	G	K	L	I	Q	.	.	.	.	.	.	.	.	.	.	V	P
Template Known Secondary structure		T	T	S		T	T	B																		T		G	G	G	T		S		T	T	S								S	S														T										.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.											.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	.	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		S	V	A	T	S	V	A	I	P	F	R	K	A	G	A	N	A	V	D	L	S	V	K	E	L	C	G	V	F	S	G	R	I	A	D	W	S	G	I	T	G	A	G	R	S	G	P	I	Q	V	V	Y	R	A	E	S	S	G	T	T	E	L	F	T	R	F	L	N	A	K	C	T	T	E	P	G	T	F	A	V
Template Known Secondary structure								B		B	B					S	S															T	S			B	G	G	G	S	T	T	S				S	B							S	S																		S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.									.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																																								.	.	.	.	.	.	.	.																	.
Query SS confidence												.	.	.	.	.	.																																								.	.	.	.	.	.	.	.																	.
Query Sequence		Q	D	F	V	R	A	L	Y	K	N	.	.	.	.	.	.	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	.	.	.	.	.	.	.	.	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	.
Query Conservation												.	.	.	.	.	.																																								.	.	.	.	.	.	.	.																	.
Alig confidence												.	.	.	.	.	.																																								.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		T	T	T	F	A	N	S	Y	S	L	G	L	T	P	L	A	G	A	V	A	A	T	G	S	D	G	V	M	A	A	L	N	D	T	T	V	A	E	G	R	I	T	Y	I	S	P	D	F	A	A	P	T	L	A	G	L	D	D	A	T	K	V	A	R	V	G	K	G	V	V	N	G	V	A	V	E	G	K	S	P
Template Known Secondary structure			S		G	G	G	T	B	T	T		S	T	T	S	T	T					S												T	T	S		S						B						S	S	S	G	G	G	G	G		T	T	T	B									T	T						B
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
																																															240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	V	S	V	V	D	K	V	.	.	.	.	.	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation
Template Sequence		A	A	A	N	V	S	A	A	I	S	V	V	P	L	P	A	A	A	D	R	G	N	P	D	V	W	V	P	V	F	G	A	T	T	G	G	G	V	V	A	Y	P	D	S	G	Y	P	I	L	G	F	T	N	L	I	F	S	Q	C	Y	A	N	A	T	Q	T	G	Q	V	R	D	F	F	T	K	H	Y	G	T	S
Template Known Secondary structure			T									T						G	G	G	T	T		G	G	G	G	S					S	S		B	T	T						S	S	S		S											S		B	S	S															T		S	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		G	Q	.	.	E	I	A	A	K	N	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N	A	F	P	K
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		A	N	N	D	A	A	I	E	A	N	A	F	V	P	L	P	S	N	W	K	A	A	V	R	A	S	F	L	T
Template Known Secondary structure		S	S	S							T	T		B															T	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions