Job Description P0AG78 Confidence 99.97% Date Wed Jan 25 15:20:33 GMT 2012 Rank 2 Aligned Residues 290 % Identity 19% Template d1y9ua_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.39

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence											.														.	.	.	.																																																.	.	.	.	.	.
Template Conservation											.														.	.	.	.
Template Sequence		E	V	S	L	Y	T	T	R	E	.	P	K	L	I	Q	P	L	L	D	A	F	A	K	.	.	.	.	D	S	G	I	K	V	N	T	V	F	V	K	D	G	L	L	E	R	V	R	A	E	G	D	K	S	P	A	D	V	L	M	T	V	D	I	G	N	L	I	D	L	V	N	G	G	V	T	Q	K	I	Q	S
Template Known Secondary structure								S	S		.	G	G	G	T										.	.	.	.												S	S										G	G	G										S										T	T
Template Predicted Secondary structure											.														.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
								97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																																						.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Q	T	L	D	S	V	V	P	A	N	L	R	G	A	E	G	S	W	Y	A	L	S	L	R	D	R	V	L	Y	V	E	K	D	L	K	L	D	S	F	R	Y	G	D	L	A	D	P	K	W	K	G	K	V	C	I	R	S	G	Q	H	P	Y	N	T	A	L	V	A	A	M	I	A	H	D	G	.	.	.	.	.
Template Known Secondary structure								S		G	G	G	B		G	G	G	S															T	T							B	G	G	G	G	G		G	G	G	T	T							T	T	S																.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.								.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.
Query Sequence		Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	.	.	.	.	.	.	.	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S
Query Conservation																																																								.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.																	.
Template Conservation																																																																															.
Template Sequence		A	E	A	T	E	K	W	L	R	G	V	K	A	N	L	A	R	K	A	A	G	G	D	R	D	V	A	R	D	I	L	G	G	I	C	D	I	G	L	A	N	A	Y	Y	V	G	H	M	K	N	A	E	P	G	T	D	A	R	K	W	G	D	A	I	K	V	V	R	P	T	F	A	G	G	T	H	V	.	N	I
Template Known Secondary structure																B	S	S		S		S											T	T	S		S															S		T	T	S								T							B					B			.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																				.											.																	.
Query SS confidence																																				.											.																	.
Query Sequence		V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V	A	.	K	K	Y	E	N	A	F	P	K	L	K	L	F	T	I	D	.	E	E	F	G	G	W	T	K	A	Q	K	E	H	F	A	N	G
Query Conservation																																				.											.																	.
Alig confidence																																				.											.																	.
Template Conservation
Template Sequence		S	G	A	A	V	A	A	H	A	P	N	K	A	N	A	V	K	L	L	E	Y	L	V	S	E	P	A	Q	T	L	Y	A	Q	A	N	Y	E	Y	P	V	R	A	G	V	K	L	D	A	V	V	A	S	F	G	P	L	K	V	D	T	L	P	V	A	E	I	A	K	Y	R	K	Q	A	S	E	L	V	D	K	V
Template Known Secondary structure								T	T		T	T												T	S											T	T				S	S	T	T										T					B			S		T																	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		321	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	F	D
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		G	.	F	D
Template Known Secondary structure		T	.	T	T
Template Predicted Secondary structure			.
Template SS confidence
		320		.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions