Job Description P0AG78 Confidence 99.93% Date Wed Jan 25 15:20:33 GMT 2012 Rank 17 Aligned Residues 269 % Identity 14% Template d1xvya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.74

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	.	.	.	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E
Query Conservation																																																			.	.	.
Alig confidence										.															.	.	.	.	.	.																					.	.	.
Template Conservation										.															.	.	.	.	.	.
Template Sequence		I	V	I	Y	N	A	Q	H	.	E	N	L	V	K	S	W	V	D	G	F	T	K	D	.	.	.	.	.	.	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P	L
Template Known Secondary structure								S		.															.	.	.	.	.	.																							G	G	G				S					S	S	S									T	T		B
Template Predicted Secondary structure										.															.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.							.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		101	.	.	.	.	.												.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	.	.	.	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																						.	.	.																																				.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		D	A	A	T	L	A	Q	V	E	P	Q	Y	R	P	S	H	G	R	W	I	G	I	A	A	R	S	T	V	F	V	Y	N	P	A	K	L	S	D	A	Q	L	P	K	S	L	L	D	L	A	K	P	E	W	K	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	L	L	E	L	.	.	.	.
Template Known Secondary structure							T	T	B		G	G	G	S		T	T		S	S														T	T	T	S		G	G	G			S	S	G	G	G	G	G	S	G	G	G	T	T	S					T	T	S														.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	.	.	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V
Query Conservation																																																														.	.
Alig confidence		.	.																							.	.																																			.	.
Template Conservation		.	.																							.	.
Template Sequence		.	.	K	G	E	K	A	T	L	A	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	.	.	N	S	T	V	M	K	A	V	N	A	G	Q	V	D	S	G	V	I	Y	H	Y	Y	P	F	V	D	G	A	K	T	G	E	N	S	N	N	I	K	L	Y	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S
Template Known Secondary structure		.	.																					S	S	.	.											T	S	S	S						T									T	T		T	T	T	T	T								T	T		G	G	G
Template Predicted Secondary structure		.	.																							.	.
Template SS confidence
				153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	.	.	N	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N	A	F	P	K	L	K	L	F	T	I	D	E	E	F	G	G	W
Query Conservation																																		.	.
Alig confidence																																		.	.												.	.
Template Conservation																																															.	.
Template Sequence		G	G	G	V	L	A	S	S	K	H	Q	Q	Q	A	Q	A	F	I	K	W	I	T	G	K	Q	G	Q	E	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	G	A	A	.	.	S	N	P	K	L	V	P	L	K	D	L	D	A	P	K	V	D	A	A	Q
Template Known Secondary structure						B	T	T		T	T													S										S	S	S			B			B	T	T			.	.			T	T	S			G	G	G	G							G	G	G
Template Predicted Secondary structure																																															.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions