Job Description P0AG78 Confidence 99.94% Date Wed Jan 25 15:20:33 GMT 2012 Rank 12 Aligned Residues 262 % Identity 15% Template d1xc1a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.51

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	.	.	.	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K
Query Conservation																																																					.	.	.
Alig confidence								.																	.	.	.	.										.	.														.	.	.
Template Conservation								.																	.	.	.	.										.	.
Template Sequence		D	I	T	V	Y	N	.	G	Q	H	K	E	A	A	Q	A	V	A	D	A	F	T	R	.	.	.	.	A	T	G	I	K	V	K	L	N	.	.	S	A	K	G	D	Q	L	A	G	Q	I	K	E	E	G	S	R	S	P	A	D	V	F	Y	S	E	Q	I	P	A	L	A	T	L	S	A	A	N	L	L	E	P
Template Known Secondary structure								.		S															.	.	.	.										.	.													T	T		T	T	S	S		S					S											T	T		B
Template Predicted Secondary structure								.																	.	.	.	.										.	.
Template SS confidence
		1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		100	.	.	.	.	.	.														.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		E	W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	.	.	.	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.																																				.
Template Conservation																																																																																	.
Template Sequence		L	P	A	S	T	I	N	E	T	R	G	K	G	V	P	V	A	A	K	K	D	W	V	A	L	S	G	R	S	R	V	V	V	Y	D	T	R	K	L	S	E	K	D	L	E	K	S	V	L	N	Y	A	T	P	K	W	K	N	R	I	G	Y	V	P	T	S	G	A	F	L	E	Q	I	V	A	I	V	K	L	.
Template Known Secondary structure										T			T	T	S				T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	S	S	G	G	G	T	T	T					T	T															.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	.	.	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T
Query Conservation																																																															.	.
Alig confidence		.	.	.	.	.																							.	.																																	.	.
Template Conservation		.	.	.	.	.																							.	.
Template Sequence		.	.	.	.	.	K	G	E	A	A	A	L	K	W	L	K	G	L	K	E	Y	G	K	P	Y	A	K	.	.	N	S	V	A	L	Q	A	V	E	N	G	E	I	D	A	A	L	I	N	N	Y	Y	W	H	A	F	A	R	E	K	G	V	Q	N	V	H	T	R	L	N	F	V	R	H	R	D	P	G	A	L	V
Template Known Secondary structure		.	.	.	.	.																	S				S	S	.	.										T	T	S	S	S																		G	G	G										T	T		G	G	G
Template Predicted Secondary structure		.	.	.	.	.																							.	.
Template SS confidence
							153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N	A	F	P	K	L	K	L	F	T
Query Conservation																																						.
Alig confidence																																						.											.	.
Template Conservation																																																	.	.
Template Sequence		T	Y	S	G	A	A	V	L	K	S	S	Q	N	K	D	E	A	K	K	F	V	A	F	L	A	G	K	E	G	Q	R	A	L	T	A	V	R	A	E	Y	P	L	N	P	H	V	V	.	.	S	T	F	N	L	E	P	I	A	K	L	E
Template Known Secondary structure									B	T	T		S														S								T	T	T	S					S	S	T	T			.	.		S	S					G	G	G	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions