Job Description P0AG78 Confidence 92.27% Date Wed Jan 25 15:20:33 GMT 2012 Rank 108 Aligned Residues 225 % Identity 7% Template d1sw5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		23	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.																		.	.	.
Predicted Secondary structure												.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	L	N	V	S	Y	D	P	T	.	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	L
Query Conservation												.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.														.	.	.	.																											.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.																											.
Template Sequence		R	V	V	I	G	S	K	P	F	N	E	Q	Y	I	L	A	N	M	I	A	I	L	L	E	.	.	.	.	E	N	G	Y	K	A	E	V	K	E	G	L	G	G	T	L	V	N	Y	E	A	L	K	R	N	D	.	I	Q	L	Y	V	E	Y	T	G	T	A	Y	N	V	I	L	R	K	Q	P	P	E	L	W	D
Template Known Secondary structure									S	S																.	.	.	.		T	T							T	T			S											T	S	.	S	S												T	T	S						S	S
Template Predicted Secondary structure																										.	.	.	.																											.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	Y	I	F	D	E	V	K	K	G	L	L	E	A	D	G	V	V	V	A	A	K	L	G	F	R	D	D	Y	A	L	A	V	R	A	D	W	A	E	E	N	G	V	E	K	I	S	D	L	A	E	F	A	D	Q	L	V	F	G	S	D	P	E	F	A	S	R	P	D	G	L	P	Q	I	K	K	V	Y	G
Template Known Secondary structure																																												T			B	G	G	G	G	T	T	T	G	G	G												S	T	T	S									T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template Sequence		F	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	V	K	Q	M	E	P	T	L	M	Y	E	A	I	K	N	K	Q	V	D	V	I	P	A	Y	T	T	D	S	R	V	D	L	F	.	.	.	.	.	N	L	K	I	L	E	D	D	K	G	A	L	P	P	Y	D	A	I	I
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							G	G	G							T	T	S		S						T	T							T	.	.	.	.	.	T					B		T	T			S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template SS confidence
		162	.	.																			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	.	.	.	L	Y	S	P	E	G	Q	E	I	A	A	K
Query Conservation																						.	.	.
Alig confidence								.														.	.	.
Template Conservation								.
Template Sequence		I	V	N	G	N	T	.	A	K	D	E	K	L	I	S	V	L	K	L	L	E	D	R	I	D	T	D	T	M	R	A	L	N	Y	Q
Template Known Secondary structure					T	T	G	.	G	G										T	T	T	T
Template Predicted Secondary structure								.
Template SS confidence
		219	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions