Job Description P0AG78 Confidence 93.57% Date Wed Jan 25 15:20:33 GMT 2012 Rank 104 Aligned Residues 249 % Identity 13% Template d1r9la_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.59

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		A	A	T	S	V	M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	.	.	.	A	D	V	V	T	L	A	L	A	Y	D	V	D
Query Conservation																																																																		.	.	.
Alig confidence																																		.	.	.	.	.								.																				.	.	.
Template Conservation																																		.	.	.	.	.								.
Template Sequence		A	D	L	P	G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	.	.	.	.	.	K	L	G	Y	T	V	N	.	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E
Template Known Secondary structure					T	T	T	T									S		G	G	G													.	.	.	.	.		T	T					.																	T	S	S									T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.								.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.												.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																							.	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	A	E	R	G	R	I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	.	.	Q	I	H	D	W	N	D	L	I	K	P	G	.	.	.	.	.	.	.	.	.	.	.	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y
Query Conservation																																							.	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																						.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		A	A	G	G	D	K	K	F	Y	.	.	.	.	.	.	.	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N
Template Known Secondary structure			T	T	G	G	G	T			.	.	.	.	.	.	.			S		S																			T			B	G	G	G	G	G	S					G	G	G		S	S	S	S	S	S								T	T	S
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	.
Query Conservation																																																																																	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.														.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Sequence		H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	.	P	G	K	D	V	V	W	L	Q	V	P	F	S	A
Template Known Secondary structure							T	T		T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.		S															T	T										S	S	S					S		.	B	T	T	T					B		S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.															.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.
																			236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	.	.	.	.	A	A	K	N	Y	Y	R	P	R	D	A	E	V	A	K	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence		L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D
Template Known Secondary structure			T	T		T	T				B		T	T	S		B		S	S		S																																										T			S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions