Job Description P0AG78 Confidence 99.94% Date Wed Jan 25 15:20:33 GMT 2012 Rank 14 Aligned Residues 290 % Identity 20% Template d1q35a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.20

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E	W	I
Query Conservation
Alig confidence											.														.	.	.	.										.
Template Conservation											.														.	.	.	.										.
Template Sequence		E	V	N	V	Y	S	Y	R	Q	.	P	Y	L	I	E	P	M	L	K	N	F	E	K	.	.	.	.	D	T	G	I	K	V	N	I	I	.	F	A	D	G	L	V	D	R	V	K	Q	E	G	E	L	S	P	A	D	V	L	L	T	V	D	I	S	R	V	M	E	I	V	N	A	D	L	A	Q	K	I	D	S
Template Known Secondary structure								S	S		.	G	G	G	T										.	.	.	.										.													G	G	G									S											T	T		B
Template Predicted Secondary structure											.														.	.	.	.										.
Template SS confidence
		3	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		103	.	.	.													.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	.	.	.	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.																																							.	.
Template Conservation																																																																																.	.
Template Sequence		K	V	L	E	K	N	I	P	A	Q	F	R	D	S	N	D	Q	W	F	G	L	T	T	R	A	R	V	I	Y	T	S	K	D	R	V	G	K	L	P	A	G	F	D	Y	L	D	L	A	K	P	E	Y	K	G	K	V	C	V	R	S	G	K	N	S	Y	N	V	S	L	F	A	A	M	I	E	H	Y	G	.	.
Template Known Secondary structure								S		G	G	G	B		T	T	S	S															T	T	T	T		S			T	T			G	G	G	G	G	S	G	G	G	T	T					S		T	T	S																.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	.	.	.	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V
Query Conservation																																																															.	.	.
Alig confidence		.	.	.																																																											.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	I	E	K	T	K	A	F	L	E	G	L	K	A	N	L	A	R	K	P	Q	G	G	D	R	D	Q	V	K	A	I	K	E	G	I	C	D	Y	S	I	G	N	S	Y	Y	Y	G	K	M	L	D	D	E	K	Q	K	S	W	A	E	A	A	I	I	N	F	P	S	G	E	H	G	T	H	K	N	I	S
Template Known Secondary structure		.	.	.														T	B	S	S				S												T	S		S						T									S	T	T	T						T								S	T	T		B
Template Predicted Secondary structure		.	.	.
Template SS confidence
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																	.	.	.	.	.	.
Query SS confidence																																			.																	.	.	.	.	.	.
Query Sequence		V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N	A	.	.	.	.	.	.	F	P	K	L	K	L	F	T	I	D	E	E	F	G	G	W	T	K	A	Q	K	E	H	F
Query Conservation																																			.																	.	.	.	.	.	.
Alig confidence																																			.																	.	.	.	.	.	.																							.	.
Template Conservation																																																																																.	.
Template Sequence		G	V	V	I	A	K	H	S	P	N	K	A	N	A	V	K	L	I	E	Y	L	S	G	E	K	A	Q	G	L	Y	A	E	L	N	H	E	Y	P	V	K	E	G	I	E	P	S	A	I	V	K	G	W	G	T	F	K	S	D	T	I	K	L	E	D	I	A	K	N	Y	E	A	A	L	K	L	V	D	E	.	.
Template Known Secondary structure						B	T	T		T	T													S																S	S	T	T										T					B										T	T											.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		318	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	G	G	T	F	D	Q	I	S	K
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	V	K	F	D	D	F	S	E
Template Known Secondary structure		.	.	.		T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					311	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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