Job Description P0AG78 Confidence 99.38% Date Wed Jan 25 15:20:33 GMT 2012 Rank 78 Aligned Residues 261 % Identity 14% Template d1j1na_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																.	.	.																										.
Query SS confidence																																																.	.	.																										.
Query Sequence		A	T	S	V	M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	.	.	.	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	.	A	Y	D	V	D
Query Conservation																																																.	.	.																										.
Alig confidence																																		.														.	.	.																										.
Template Conservation																																		.
Template Sequence		A	T	W	V	T	D	K	P	L	T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	K	E	.	S	F	R	L	T	N	V	K	L	Q	S	V	A	N	K	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	D	L	P	D	V	V	G	G	D	N	L	K	D	K	F	I
Template Known Secondary structure		T	T		S		S	S											T	T	T					T	T	S						.						S							S		T	T													T	S	S				S					S	S
Template Predicted Secondary structure																																		.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		90	.	.	.	.	.	.	.	.	.																											100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.													.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.													.	.	.	.	.
Query Sequence		A	I	A	E	R	G	R	I	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	I	K	R	L	P	D	N	S	A	P	.	.	.	Y	T	S	T	I	V	F	L	V	R	K	G	.	.	.	.	.	N	P	K	Q	I	H	D	W	N	D	L	I
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.													.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	G	Q	E	G	A	F	V	P	L	N	K	L	I	D	Q	Y	A	P	H	I	K	A	F	F	K	S	H	P	E	V	E	R	A	I	K	A	P	D	G	N	I	Y	F	I	P	Y	V	P	D	G	V	V	A	R	G	Y	F	I	R	E	D	W	L	K	K	L	N	L	K	P	P	Q	N	I	D	E	L	Y
Template Known Secondary structure						T	T	S	B																															T	T	S												S															T	T						B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		136	.	.	.	140	.	.													.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	G	V	S	V	I	.	.	.	.	.	.	.	.	.	.	.	.	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	K	A	F	K	E	K	D	P	N	G	N	G	K	A	D	E	V	P	F	I	D	R	H	P	D	E	V	F	R	L	V	N	F	W	G	A	R	S	S	G	S	D	N	Y	M	D	F	Y	I	D	N	G	R	V	K	H	P	W	A	E	T	A	F	R	D	G	M	K	H	V	A	Q	W	Y	K	E	G
Template Known Secondary structure										S		T	T		S	S	S									S	S	T	T					G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		186	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.									.	.	.	.	250
Predicted Secondary structure						.	.	.																																	.	.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence						.	.	.																																	.	.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		E	V	L	D	.	.	.	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	.	.	.	.	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	.	.	.	.	.	.	.	.	D	K	V	V	E
Query Conservation						.	.	.																																	.	.	.	.																									.	.	.	.	.	.	.	.
Alig confidence						.	.	.																																	.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	D	K	E	I	F	T	R	K	A	K	A	R	E	Q	M	F	G	G	N	L	G	G	F	T	H	D	W	F	A	S	T	M	T	F	N	E	G	L	A	K	T	V	P	G	F	K	L	I	P	I	A	P	P	T	N	S	K	G	Q	R	W	E	E	D	S	R	Q	K	V	R	P	D	G	W	A	I	T	V
Template Known Secondary structure			B		T	T	T	T	T		G	G	G								T	T														T					T	T	T	T	S	T	T										B		T	T	S				B						S	S		S						B	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	K	N	P	V	E	T	I	K	F	F	D	F	Y	F	S	R	P	G	R	D	I	S	N
Template Known Secondary structure		T		S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions