Job Description P0AG78 Confidence 99.81% Date Wed Jan 25 15:20:33 GMT 2012 Rank 61 Aligned Residues 306 % Identity 14% Template d1eu8a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.90

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure															.	.																																			.	.	.	.	.
Query SS confidence															.	.																																			.	.	.	.	.
Query Sequence		K	D	I	Q	L	L	N	V	S	Y	D	P	T	.	.	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	.	.	.	.	.	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A
Query Conservation															.	.																																			.	.	.	.	.
Alig confidence															.	.																.	.	.																	.	.	.	.	.																					.
Template Conservation																																.	.	.																																										.
Template Sequence		E	E	G	K	I	V	F	A	V	G	G	A	P	N	E	I	E	Y	W	K	G	V	I	A	E	F	E	K	K	Y	.	.	.	P	G	V	T	V	E	L	K	R	Q	A	T	D	T	E	Q	R	R	L	D	L	V	N	A	L	R	G	K	S	S	D	P	D	V	F	L	M	D	V	A	W	.	L	G	Q	F	I
Template Known Secondary structure			S	S									S																		S	.	.	.	T	T										S	S													T	T	T		S	S								T	T	T	.
Template Predicted Secondary structure																																.	.	.																																										.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.																								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.							.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		E	R	G	R	I	D	K	E	W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	.	.	.	.	.	.	N	P	K	Q	I	H	D	W	N	D	L	I	K	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	G	W	L	E	P	L	D	D	Y	V	Q	K	D	N	Y	D	L	S	V	F	F	Q	S	V	I	N	L	A	D	K	Q	G	G	K	L	Y	A	L	P	V	Y	I	D	A	G	L	L	Y	Y	R	K	D	L	L	E	K	Y	G	Y	S	K	P	P	E	T	W	Q	E	L	V	E	M	A	Q	K	I	Q	S
Template Known Secondary structure				T		B			S								T			G	G	G	B									T			T	T																								T	T			S			S	B
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
							137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.															.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.
Predicted Secondary structure		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		.	.	.	.	.	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	.	.	.	.	.	L	D	S	G	A
Query Conservation		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		G	E	R	E	T	N	P	N	F	W	G	F	V	W	Q	G	K	Q	Y	E	G	L	V	C	D	F	V	E	Y	V	Y	S	N	G	G	S	L	G	E	F	K	D	G	K	W	V	P	T	L	N	K	P	E	N	V	E	A	L	Q	F	M	V	D	L	I	H	K	Y	K	I	S	P	P	N	T	Y	T	E	M	T
Template Known Secondary structure				T	T	T		T	T									S	S	S													T	T	T			S					T	T						T	T																	T	S			S		G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.						.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	.	.	.	.	.	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S
Query Conservation																																											.	.	.	.	.
Alig confidence																																											.	.	.	.	.
Template Conservation
Template Sequence		E	E	P	V	R	L	M	F	Q	Q	G	N	A	A	F	E	R	N	W	P	Y	A	W	G	L	H	N	A	D	D	S	P	V	K	G	K	V	G	V	A	P	L	P	H	F	P	G	H	K	S	A	A	T	L	G	G	W	H	I	G	I	S	K	Y	S	D	N	K	A	L	A	W	E	F	V	K	F	V	E	S
Template Known Secondary structure											T	T									T							T	S	T	T		T	T	T	T									B		T	T	S					B									B	T	T		S													T	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.																	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	Y	E	N	A	F	P	K	L	K	L	F	T	I	D	E	E	F	G	G	W	T	K	A	Q	K	E	H	F	A	N	G	G	T	F	D	Q	I	S	K	R
Query Conservation												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	V	Q	K	G	F	A	M	N	L	G	W	N	P	G	R	V	D	V	Y	D	D	P	A	V	V	S	K	S	P	H	L	K	E	L	R	A	V	F	E	N	A	V	P	R	P	I	V	P	Y	Y	P	Q	L	S	E	I	I	Q	K	Y	V	N	S	A	L	A	G	K	I	S	P	Q	E	A	L	D	K
Template Known Secondary structure												T				B	S	B	T	T	G	G	G	S								T					T						T		B						T	T																		T	S	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions