Job Description P0AG78 Confidence 72.64% Date Wed Jan 25 15:20:33 GMT 2012 Rank 117 Aligned Residues 224 % Identity 11% Template d1al3a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		23	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Q	L	L	N	V	S	Y	D	P	T	.	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E	W
Query Conservation												.
Alig confidence												.																.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	Y	V	A	T	T	H	T	Q	A	R	Y	A	L	P	G	V	I	K	G	F	I	E	R	Y	.	.	.	.	.	P	R	V	S	L	H	M	H	Q	G	S	P	T	Q	I	A	E	A	V	S	K	G	N	A	D	F	A	I	A	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	H
Template Known Secondary structure															T	S												.	.	.	.	.	T																				T	T			S					S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	D	D	L	V	M	L	P	C	Y	H	W	N	R	S	I	V	V	T	P	E	H	P	L	A	T	K	G	S	V	S	I	E	E	L	A	Q	Y	P	L	V	T	Y	T	F	G	F	T	G	R	S	E	L	D	T	A	F	N	R	A	G	L	T	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S																		T	T	S	T	T	T	T	T	S									T	S							T	T	S	T	T												T					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y
Query Conservation
Alig confidence		.	.	.	.																											.	.	.	.																															.	.	.	.
Template Conservation		.	.	.	.																											.	.	.	.																															.	.	.	.
Template Sequence		.	.	.	.	I	V	F	T	A	T	D	A	D	V	I	K	T	Y	V	R	L	G	L	G	V	G	V	I	A	S	.	.	.	.	M	A	V	D	P	V	S	D	P	D	L	V	K	L	D	A	N	G	I	F	S	H	S	T	T	K	I	G	F	R	.	.	.	.	R	S	T	F	L	R	S	Y	M	Y	D	F
Template Known Secondary structure		.	.	.	.						S	S											T	S							G	.	.	.	.	G	G			T	T	T		T	T	S						B	T	T	B											.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.																											.	.	.	.																															.	.	.	.
Template SS confidence
						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	R	F	A	P	H	L	T	R	D	V	V	D	T	A	V	A	L	R	S	N	E	D	I	E	A	M	F	K	D
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions