Job Description P0AG78 Confidence 99.89% Date Wed Jan 25 15:20:33 GMT 2012 Rank 25 Aligned Residues 292 % Identity 16% Template d1a99a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.20

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E
Query Conservation
Alig confidence																.	.										.	.	.	.																																	.
Template Conservation																.	.										.	.	.	.																																	.
Template Sequence		Q	K	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	P	D	T	V	A	N	F	E	K	.	.	.	.	E	T	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	.	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L
Template Known Secondary structure											T	T		S		.	.	T	T								.	.	.	.												S																	S				.		B										T	T		B
Template Predicted Secondary structure																.	.										.	.	.	.																																	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		101	.	.	.	.	.																						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.								.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Query Sequence		W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	.	.	.	.	.	.	.	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	S	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D
Template Known Secondary structure			G	G	G		G	G	G	G	G	B										T	T	S	G	G	G		S																								T	T			T	T	S	T					S								G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170								.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																																																						.	.
Query SS confidence																				.	.	.	.	.	.	.																																																						.	.
Query Sequence		R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	.	.	.	.	.	.	.	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	.	.
Query Conservation																				.	.	.	.	.	.	.																																																						.	.
Alig confidence																				.	.	.	.	.	.	.																								.	.	.																												.	.
Template Conservation																																																		.	.	.
Template Sequence		A	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	R	P	N	I	R	Y	F	H	S	S	Q	Y	.	.	.	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A	G	D	V	W	Q	A	S	N	R	A	K	E	A
Template Known Secondary structure														T	T	S		T	T									T										G	G	G						S	S	T		.	.	.						T	T	S		S
Template Predicted Secondary structure																																																		.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
				224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.								.	290	.	.	.
Predicted Secondary structure		.	.																																																							.												.	.	.	.	.	.	.
Query SS confidence		.	.																																																							.												.	.	.	.	.	.	.
Query Sequence		.	.	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V	A	K	.	.	.	.	.	.	.	K	Y	E	N	A
Query Conservation		.	.																																																							.												.	.	.	.	.	.	.
Alig confidence		.	.																.	.	.																																					.												.	.	.	.	.	.	.
Template Conservation																			.	.	.
Template Sequence		K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	.	.	.	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V	S	A	E	V	R	E	N	P	G	I
Template Known Secondary structure		T		S									T	T					.	.	.								B	T	T		S														S																S	B	T	T	T	G	G	G	S						T		T	T	T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	K	L	K	L	F	T	I	D	E	E	F	G	G	W	T	K	A	Q	K	E	H	F	A	N	G	G	T	F	D	Q	I	S
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	D	P	K	I	D	R	V	R	T	R	A	.	.	W	T	K	V	K
Template Known Secondary structure		S							T	T																			.	.
Template Predicted Secondary structure																													.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions