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Job DescriptionP0AG78
Confidence95.55%DateWed Jan 25 15:20:33 GMT 2012
Rank99Aligned Residues188
% Identity14%Templatec3uifA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60. ........70.........80.........90.........100.........110.........120.
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Query Sequence  FSAHWKQQTGDNVVIRQSH. GGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLVR
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Template Sequence  FPEELRKQ. GIKVEWVPAAXASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQ. . . . . . . LVAPWGTTSNSYLVVP
Template Known Secondary structure  T.T
TT
TT


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   57..60.... .....70.........80.........90.........100.........110.. .......120........
 
   122.......130.........140.........150.........160.........170.........180.........190.........200.
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Query Sequence  KGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVE
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Template Sequence  KNST. . AKSIKDL. . . . KGKKIALHRGRPWELAFSNLLQSEGLTFKD. . . . . . . . . . . . . . . . . FKIVNVNPQVGAAALA
Template Known Secondary structure  TT

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SGGGG....TTS
TTSTTT

GGG.................S


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   129130.. ....... 140.........150.........160......... 170.........180.....
 
   202.......210.........220.........230.........240.........250.........260...
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Query Sequence  RGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLK
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Template Sequence  SGTVDGFFSLFDSYILEDR. . GVGKIIWSTKTAPVDWKLXGGVWARNDFVKQNPEITQAIVT
Template Known Secondary structure  TSSSSTTT..TSGGGS
GGGS


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   186...190.........200.... .....210.........220.........230.........240.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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