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Job DescriptionP0AG78
Confidence98.06%DateWed Jan 25 15:20:33 GMT 2012
Rank90Aligned Residues222
% Identity16%Templatec3tqwA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  VSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWIKRLP
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Template Sequence  TIAGPETQLXEVAKQVALNRY. . . . GLHVNII. TFSDYNTPNEALADGS. VDANXFQHLPYLKAQIEXRGYK. . . . . . IV
Template Known Secondary structure  TT....


.S
TTSTTS.
S


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   6...10.........20...... ...30... ......40......... 50.........60.........70. ..
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  DNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRALYKNVE
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Template Sequence  SIGKTFVYPXGLYSKKI. . . . . TALTQLKT. . . GAKIAVPSDPSNEARALLLLEKAQLIQLKTHINAT. . . PXDIASNPK
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SS
.....SSGGG

T...T

STTS







...GGG
TT
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   74.....80.........90 ........ .100.........110.........120.........130... ......140..
 
   187..190.........200.........210.........220.........230.........240.........250.........260......
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Query Sequence  VLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLY
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Template Sequence  KLKIVELDAAQLSRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGPNS. . . . . . PYANVVAVREDDKNDPRLKQLVSALH
Template Known Secondary structure 


GGGGGG
TTT
S
GGGT

TTTT
S

SSS......S
GGGTT
T
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   145....150.........160.........170.........180.........190.. .......200.........210........
 
   267..270.......
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Query Sequence  SPEGQEIAAKN
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Template Sequence  SPAVLSAAKKI
Template Known Secondary structure  S
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   219220.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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