Job Description P0AG78 Confidence 99.83% Date Wed Jan 25 15:20:33 GMT 2012 Rank 52 Aligned Residues 269 % Identity 12% Template c3qufB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 1.70 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		S	V	M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	.	.	.	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A
Query Conservation																																																			.	.	.
Alig confidence																			.															.	.	.															.	.	.																			.
Template Conservation																			.															.	.	.																																				.
Template Sequence		T	A	G	G	G	K	T	K	I	S	F	Y	S	Y	F	K	D	.	N	Q	I	G	E	V	V	K	G	F	E	K	K	N	.	.	.	P	D	I	T	L	D	V	Q	Y	G	Q	D	P	A	Q	Y	I	S	T	L	Q	T	R	L	A	G	G	K	P	P	T	I	F	N	L	.	T	X	D	N	R	T	D	V	X
Template Known Secondary structure			G	G	G										S	S			.															.	.	.	T	T									S	S														S	S	S			S					.		T	T	T
Template Predicted Secondary structure																			.															.	.	.																																				.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.																		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		E	R	G	R	I	D	K	E	W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	.	.	.	.	.	.	G	N	P	K	Q	I	H	D	W	N	D	L	.	.	.	.	.	.	I	K	P	G	V	S	V	I	T
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	G	A	A	L	D	I	S	G	E	D	F	L	D	G	I	D	D	T	N	F	A	L	F	Q	Q	D	G	K	T	Y	G	X	P	V	S	A	W	V	G	A	F	F	Y	N	K	D	I	L	K	K	A	G	Y	D	K	F	P	K	T	W	D	E	F	I	E	X	G	K	K	I	N	S	N	G	S	T	A	F
Template Known Secondary structure				T		B				T	T		G	G	G	T	T	B		G	G	G	G	G	G	G			T	T					B																			T	T		S	S			S	B														T	T	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	.	.	.	A	R	G	S	T	N	T	F	V	E	R	G	I
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		L	E	D	F	N	T	Q	I	A	G	S	F	T	G	L	L	A	S	Y	Y	G	E	Q	G	K	S	G	D	L	D	A	D	I	W	S	G	K	S	T	F	T	K	D	W	T	P	V	F	K	R	W	E	A	A	A	K	A	G	V	I	P	Q	K	S	V	G	L	S	A	D	Q	V	K	Q	E	F	V	S	G	N
Template Known Secondary structure						S	S	S	S														T	T	T			S	S	T	T						T	S	S																			T	T	S	S		G	G	G	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.
Predicted Secondary structure																																										.	.	.	.	.																																		.
Query SS confidence																																										.	.	.	.	.																																		.
Query Sequence		G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	.	.	.	.	.	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y
Query Conservation																																										.	.	.	.	.																																		.
Alig confidence																																										.	.	.	.	.																																		.
Template Conservation
Template Sequence		L	G	V	X	R	S	G	P	W	D	L	P	D	L	Q	K	S	D	I	D	F	G	V	A	P	F	P	A	Y	S	K	E	D	G	Q	W	I	N	G	G	P	D	Q	G	F	A	I	A	S	R	A	S	D	K	E	K	A	A	A	K	K	F	L	A	Y	L	N	S	E	E	G	L	E	A	F	T	S	A	A	G
Template Known Secondary structure									G	G	G							S	S										B	S	S		T	T									S						B	T	T	S																T	S												T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	P	R	D	A	E	V	A	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	S	L	S	S	K	Y	N	A	E
Template Known Secondary structure						B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions