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Job DescriptionP0AG78
Confidence99.86%DateWed Jan 25 15:20:33 GMT 2012
Rank32Aligned Residues276
% Identity13%Templatec3py7A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution
Resolution2.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KDIQLLNV. SYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRID
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Template Sequence  EEGKLVIWINGDKGYNGLAEVGKKFEK. . . . DTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFW. AHDRFGGYAQSGLLA
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TT

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TTTT
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S.GGGTT
B
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Query Sequence  KEWIKRLP. . . . . . . . . . . . . . . . . . DNSAPYTSTIVFLVRKGN. PKQIHDWNDLIKP. . . . GVSVITPNPKSSGGARWN
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Template Sequence  EITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFT
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TTB
TTT
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TTT
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SBGGGTTT




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   7980.........90.........100.........110.........120.........130.........140.........150........
 
   156...160... ......170.........180.........190.........200.........210.........220
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Query Sequence  YLAAWGYA. . . . . . . . . . . . . . . LHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAAN
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Template Sequence  WPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDT
Template Known Secondary structure  TT
TTSSSTTSS
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   159160.........170.........180.........190.........200.........210.........220.........230........
 
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Query Sequence  ELGKDKFEIVT. PSESILAEPTVSVVDKVVEKKGTKEVAEAYLK. YLYSPEGQEIAAKN. YYRPRDAEVAKKYENAFPKL
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Template Sequence  SAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRI
Template Known Secondary structure  SS




TT


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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   298.300
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Query Sequence  KLF
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Template Sequence  AAT
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   319320.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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