Job Description P0AG78 Confidence 99.91% Date Wed Jan 25 15:20:33 GMT 2012 Rank 21 Aligned Residues 285 % Identity 14% Template c3pu5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis Resolution 2.05 Å

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		20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		K	D	I	Q	L	L	N	V	S	Y	D	P	.	.	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I
Query Conservation														.	.
Alig confidence														.	.															.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		A	D	D	H	I	Y	V	T	S	S	G	G	S	F	L	E	N	V	R	K	H	X	A	E	P	F	E	K	.	.	.	.	Q	S	G	V	K	V	T	L	V	P	G	T	N	P	A	H	A	L	K	I	L	S	S	R	G	T	P	P	Y	D	V	A	A	F	G	G	N	D	X	Y	R	L	I	R	A	K	K	L
Template Known Secondary structure		T	T																				T							.	.	.	.																									S	S		S		S															T	T		B
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.																.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																													.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																													.	.	.	.	.
Query Sequence		D	K	E	W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	.	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	.	.	.	.	.	R	W	N	Y
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																													.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																													.	.	.	.	.
Template Conservation
Template Sequence		A	Q	V	D	E	K	S	V	P	S	L	A	D	V	P	E	K	F	K	A	D	W	E	G	C	G	S	L	Y	D	Y	S	S	V	G	I	A	Y	R	P	D	K	I	Q	G	G	V	K	S	W	K	E	F	V	E	R	T	V	A	G	E	F	G	K	Q	V	F	F	N	N	L	S	S	N	V	R	G	A	E	V
Template Known Secondary structure						T	T	T		G	G	G	G	G	S		G	G	G	T	G	G	G	T	T	S						B									T	T	T	S	T	T			S	S											T	T	T	T	T							G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		L	S	X	F	G	K	I	Y	G	S	G	Y	G	D	I	E	A	S	I	A	T	L	E	R	X	K	P	H	I	F	K	F	F	T	A	F	N	D	P	V	V	L	L	.	T	S	G	E	G	A	I	G	P	G	W	D	G	R	T	F	I	A	E	D	S	T	K	G	X	V	K	W	V	D	P	T	E	G	A	V
Template Known Secondary structure										S	S	S	T	T													G	G	G							S	T	T							.			T	S		S																T	T	T	S	S						T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N	A	F	P	K	L	K	L	F	T	I	D	E	E	F	G	G	W	T	K	A	Q	K	E
Query Conservation																																											.
Alig confidence									.	.	.	.	.																														.											.	.
Template Conservation									.	.	.	.	.																																									.	.
Template Sequence		S	S	G	P	V	X	A	.	.	.	.	.	V	V	K	G	G	K	E	D	L	A	K	A	F	X	N	Y	A	L	G	E	E	A	Q	K	A	F	C	E	A	X	Y	Y	G	A	V	N	R	K	V	Q	.	.	Y	S	E	K	L	K	H	R	L	P	S	I	D	S	V	Q	L	V	D	T	A	L	L	I	K	N
Template Known Secondary structure									.	.	.	.	.		B	T	T	S													T	S												T		B		S		T	T			.	.			T	T	T	T	T	T	S			T	T	T		B
Template Predicted Secondary structure									.	.	.	.	.																																									.	.
Template SS confidence
		266	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		316
Predicted Secondary structure
Query SS confidence
Query Sequence		H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		339

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions