Return to main results Retrieve Phyre Job Id

Job DescriptionP0AG78
Confidence90.90%DateWed Jan 25 15:20:33 GMT 2012
Rank109Aligned Residues230
% Identity15%Templatec3pppA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60.........70.........80. ..
Predicted Secondary structure 


















................
Query SS confidence 





























































. . . . . . . . . . . . . . . .

Query Sequence  KDIQLLNVSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVT. . . . . . . . . . . . . . . . LA
Query Conservation      
              
   


     

  
 
      
         
   

  ................  
Alig confidence 

























....

























.




................

Template Conservation 
 
 

   

   
 
 
    

 ....  
  
              

  
 .


      
             
Template Sequence  DTIKIGAQSMTESEIVANMIAQLIEH. . . . DTDLNTALVKNLGSNYVQHQAMLGGD. IDISATRYSGTDLTSTLGKEAEK
Template Known Secondary structure 
SS....
S

STTS.
STTS





Template Predicted Secondary structure 





....










.














Template SS confidence 















































































   32.......40.........50....... ..60.........70.........80... ......90.........100......
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  LAYDVDAIAERGRIDKEWIKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYA
Query Conservation         
   
                                   
 

     
           
           
Alig confidence 















































































Template Conservation                   

             
 
    
    
 

 

         
              

   
Template Sequence  DPKKALNIVQNEFQKRFSYKWFDSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKGDGYKGFVST
Template Known Secondary structure 





S
B

T
SBGGGGGGGGGG

TTTTT
SSSS
Template Predicted Secondary structure 












































Template SS confidence 















































































   107..110.........120.........130.........140.........150.........160.........170.........180......
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  LHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVS
Query Conservation                   
  
               
  
           
              
 
           
Alig confidence 




.................


































.....

















Template Conservation 


  .................             
    
  
   
 
       .....

  



    
     
Template Sequence  YGFEF. . . . . . . . . . . . . . . . . GTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAY. . . . . DLKILKDDKRFFPPYDCS
Template Known Secondary structure 



.................S

GGGTTS
STT
TT.....T
B
TT

S


B
Template Predicted Secondary structure 




.................
















.....










Template SS confidence 















































































   187..190. ........200.........210.........220...... ...230.........240....
 
   244.....250.........260.... .....270......
Predicted Secondary structure 






..

Query SS confidence 




















. .











Query Sequence  VVDKVVEKKGTKEVAEAYLKY. . LYSPEGQEIAAK
Query Conservation      
 
 
   


  

 
..


 
 
 
   
Alig confidence 




















..











Template Conservation    
        
     
      

 
 
  
  
Template Sequence  PVIPEKVLKEHPELEGVINKLIGQIDTETMQELNY
Template Known Secondary structure  STTTTTT


Template Predicted Secondary structure 






Template SS confidence 


































   245....250.........260.........270.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions